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A method to construct the dynamic landscape of a bio-membrane with experiment and simulation
Biomolecular function is based on a complex hierarchy of molecular motions. While biophysical methods can reveal details of specific motions, a concept for the comprehensive description of molecular dynamics over a wide range of correlation times has been unattainable. Here, we report an approach to...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8748619/ https://www.ncbi.nlm.nih.gov/pubmed/35013165 http://dx.doi.org/10.1038/s41467-021-27417-y |
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author | Smith, Albert A. Vogel, Alexander Engberg, Oskar Hildebrand, Peter W. Huster, Daniel |
author_facet | Smith, Albert A. Vogel, Alexander Engberg, Oskar Hildebrand, Peter W. Huster, Daniel |
author_sort | Smith, Albert A. |
collection | PubMed |
description | Biomolecular function is based on a complex hierarchy of molecular motions. While biophysical methods can reveal details of specific motions, a concept for the comprehensive description of molecular dynamics over a wide range of correlation times has been unattainable. Here, we report an approach to construct the dynamic landscape of biomolecules, which describes the aggregate influence of multiple motions acting on various timescales and on multiple positions in the molecule. To this end, we use (13)C NMR relaxation and molecular dynamics simulation data for the characterization of fully hydrated palmitoyl-oleoyl-phosphatidylcholine bilayers. We combine dynamics detector methodology with a new frame analysis of motion that yields site-specific amplitudes of motion, separated both by type and timescale of motion. In this study, we show that this separation allows the detailed description of the dynamic landscape, which yields vast differences in motional amplitudes and correlation times depending on molecular position. |
format | Online Article Text |
id | pubmed-8748619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-87486192022-01-20 A method to construct the dynamic landscape of a bio-membrane with experiment and simulation Smith, Albert A. Vogel, Alexander Engberg, Oskar Hildebrand, Peter W. Huster, Daniel Nat Commun Article Biomolecular function is based on a complex hierarchy of molecular motions. While biophysical methods can reveal details of specific motions, a concept for the comprehensive description of molecular dynamics over a wide range of correlation times has been unattainable. Here, we report an approach to construct the dynamic landscape of biomolecules, which describes the aggregate influence of multiple motions acting on various timescales and on multiple positions in the molecule. To this end, we use (13)C NMR relaxation and molecular dynamics simulation data for the characterization of fully hydrated palmitoyl-oleoyl-phosphatidylcholine bilayers. We combine dynamics detector methodology with a new frame analysis of motion that yields site-specific amplitudes of motion, separated both by type and timescale of motion. In this study, we show that this separation allows the detailed description of the dynamic landscape, which yields vast differences in motional amplitudes and correlation times depending on molecular position. Nature Publishing Group UK 2022-01-10 /pmc/articles/PMC8748619/ /pubmed/35013165 http://dx.doi.org/10.1038/s41467-021-27417-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Smith, Albert A. Vogel, Alexander Engberg, Oskar Hildebrand, Peter W. Huster, Daniel A method to construct the dynamic landscape of a bio-membrane with experiment and simulation |
title | A method to construct the dynamic landscape of a bio-membrane with experiment and simulation |
title_full | A method to construct the dynamic landscape of a bio-membrane with experiment and simulation |
title_fullStr | A method to construct the dynamic landscape of a bio-membrane with experiment and simulation |
title_full_unstemmed | A method to construct the dynamic landscape of a bio-membrane with experiment and simulation |
title_short | A method to construct the dynamic landscape of a bio-membrane with experiment and simulation |
title_sort | method to construct the dynamic landscape of a bio-membrane with experiment and simulation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8748619/ https://www.ncbi.nlm.nih.gov/pubmed/35013165 http://dx.doi.org/10.1038/s41467-021-27417-y |
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