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A method to construct the dynamic landscape of a bio-membrane with experiment and simulation

Biomolecular function is based on a complex hierarchy of molecular motions. While biophysical methods can reveal details of specific motions, a concept for the comprehensive description of molecular dynamics over a wide range of correlation times has been unattainable. Here, we report an approach to...

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Autores principales: Smith, Albert A., Vogel, Alexander, Engberg, Oskar, Hildebrand, Peter W., Huster, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8748619/
https://www.ncbi.nlm.nih.gov/pubmed/35013165
http://dx.doi.org/10.1038/s41467-021-27417-y
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author Smith, Albert A.
Vogel, Alexander
Engberg, Oskar
Hildebrand, Peter W.
Huster, Daniel
author_facet Smith, Albert A.
Vogel, Alexander
Engberg, Oskar
Hildebrand, Peter W.
Huster, Daniel
author_sort Smith, Albert A.
collection PubMed
description Biomolecular function is based on a complex hierarchy of molecular motions. While biophysical methods can reveal details of specific motions, a concept for the comprehensive description of molecular dynamics over a wide range of correlation times has been unattainable. Here, we report an approach to construct the dynamic landscape of biomolecules, which describes the aggregate influence of multiple motions acting on various timescales and on multiple positions in the molecule. To this end, we use (13)C NMR relaxation and molecular dynamics simulation data for the characterization of fully hydrated palmitoyl-oleoyl-phosphatidylcholine bilayers. We combine dynamics detector methodology with a new frame analysis of motion that yields site-specific amplitudes of motion, separated both by type and timescale of motion. In this study, we show that this separation allows the detailed description of the dynamic landscape, which yields vast differences in motional amplitudes and correlation times depending on molecular position.
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spelling pubmed-87486192022-01-20 A method to construct the dynamic landscape of a bio-membrane with experiment and simulation Smith, Albert A. Vogel, Alexander Engberg, Oskar Hildebrand, Peter W. Huster, Daniel Nat Commun Article Biomolecular function is based on a complex hierarchy of molecular motions. While biophysical methods can reveal details of specific motions, a concept for the comprehensive description of molecular dynamics over a wide range of correlation times has been unattainable. Here, we report an approach to construct the dynamic landscape of biomolecules, which describes the aggregate influence of multiple motions acting on various timescales and on multiple positions in the molecule. To this end, we use (13)C NMR relaxation and molecular dynamics simulation data for the characterization of fully hydrated palmitoyl-oleoyl-phosphatidylcholine bilayers. We combine dynamics detector methodology with a new frame analysis of motion that yields site-specific amplitudes of motion, separated both by type and timescale of motion. In this study, we show that this separation allows the detailed description of the dynamic landscape, which yields vast differences in motional amplitudes and correlation times depending on molecular position. Nature Publishing Group UK 2022-01-10 /pmc/articles/PMC8748619/ /pubmed/35013165 http://dx.doi.org/10.1038/s41467-021-27417-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Smith, Albert A.
Vogel, Alexander
Engberg, Oskar
Hildebrand, Peter W.
Huster, Daniel
A method to construct the dynamic landscape of a bio-membrane with experiment and simulation
title A method to construct the dynamic landscape of a bio-membrane with experiment and simulation
title_full A method to construct the dynamic landscape of a bio-membrane with experiment and simulation
title_fullStr A method to construct the dynamic landscape of a bio-membrane with experiment and simulation
title_full_unstemmed A method to construct the dynamic landscape of a bio-membrane with experiment and simulation
title_short A method to construct the dynamic landscape of a bio-membrane with experiment and simulation
title_sort method to construct the dynamic landscape of a bio-membrane with experiment and simulation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8748619/
https://www.ncbi.nlm.nih.gov/pubmed/35013165
http://dx.doi.org/10.1038/s41467-021-27417-y
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