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Using dual-network-analyser for communities detecting in dual networks

BACKGROUND: Representations of the relationships among data using networks are widely used in several research fields such as computational biology, medical informatics and social network mining. Recently, complex networks have been introduced to better capture the insights of the modelled scenarios...

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Autores principales: Guzzi, Pietro Hiram, Tradigo, Giuseppe, Veltri, Pierangelo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8750846/
https://www.ncbi.nlm.nih.gov/pubmed/35012460
http://dx.doi.org/10.1186/s12859-022-04564-7
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author Guzzi, Pietro Hiram
Tradigo, Giuseppe
Veltri, Pierangelo
author_facet Guzzi, Pietro Hiram
Tradigo, Giuseppe
Veltri, Pierangelo
author_sort Guzzi, Pietro Hiram
collection PubMed
description BACKGROUND: Representations of the relationships among data using networks are widely used in several research fields such as computational biology, medical informatics and social network mining. Recently, complex networks have been introduced to better capture the insights of the modelled scenarios. Among others, dual networks (DNs) consist of mapping information as pairs of networks containing the same set of nodes but with different edges: one, called physical network, has unweighted edges, while the other, called conceptual network, has weighted edges. RESULTS: We focus on DNs and we propose a tool to find common subgraphs (aka communities) in DNs with particular properties. The tool, called Dual-Network-Analyser, is based on the identification of communities that induce optimal modular subgraphs in the conceptual network and connected subgraphs in the physical one. It includes the Louvain algorithm applied to the considered case. The Dual-Network-Analyser can be used to study DNs, to find common modular communities. We report results on using the tool to identify communities on synthetic DNs as well as real cases in social networks and biological data. CONCLUSION: The proposed method has been tested by using synthetic and biological networks. Results demonstrate that it is well able to detect meaningful information from DNs.
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spelling pubmed-87508462022-01-11 Using dual-network-analyser for communities detecting in dual networks Guzzi, Pietro Hiram Tradigo, Giuseppe Veltri, Pierangelo BMC Bioinformatics Software BACKGROUND: Representations of the relationships among data using networks are widely used in several research fields such as computational biology, medical informatics and social network mining. Recently, complex networks have been introduced to better capture the insights of the modelled scenarios. Among others, dual networks (DNs) consist of mapping information as pairs of networks containing the same set of nodes but with different edges: one, called physical network, has unweighted edges, while the other, called conceptual network, has weighted edges. RESULTS: We focus on DNs and we propose a tool to find common subgraphs (aka communities) in DNs with particular properties. The tool, called Dual-Network-Analyser, is based on the identification of communities that induce optimal modular subgraphs in the conceptual network and connected subgraphs in the physical one. It includes the Louvain algorithm applied to the considered case. The Dual-Network-Analyser can be used to study DNs, to find common modular communities. We report results on using the tool to identify communities on synthetic DNs as well as real cases in social networks and biological data. CONCLUSION: The proposed method has been tested by using synthetic and biological networks. Results demonstrate that it is well able to detect meaningful information from DNs. BioMed Central 2022-01-10 /pmc/articles/PMC8750846/ /pubmed/35012460 http://dx.doi.org/10.1186/s12859-022-04564-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Software
Guzzi, Pietro Hiram
Tradigo, Giuseppe
Veltri, Pierangelo
Using dual-network-analyser for communities detecting in dual networks
title Using dual-network-analyser for communities detecting in dual networks
title_full Using dual-network-analyser for communities detecting in dual networks
title_fullStr Using dual-network-analyser for communities detecting in dual networks
title_full_unstemmed Using dual-network-analyser for communities detecting in dual networks
title_short Using dual-network-analyser for communities detecting in dual networks
title_sort using dual-network-analyser for communities detecting in dual networks
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8750846/
https://www.ncbi.nlm.nih.gov/pubmed/35012460
http://dx.doi.org/10.1186/s12859-022-04564-7
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