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Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer

BACKGROUND: Pancreatic cancer (PC) is a highly lethal disease and an increasing cause of cancer-associated mortality worldwide. Interferon regulatory factors (IRFs) play vital roles in immune response and tumor cellular biological processes. However, the specific functions of IRFs in PC and tumor im...

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Autores principales: Zhang, Ke, Xu, Pan-Ling, Li, Yu-Jie, Dong, Shu, Gao, Hui-Feng, Chen, Lian-Yu, Chen, Hao, Chen, Zhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8751298/
https://www.ncbi.nlm.nih.gov/pubmed/35012444
http://dx.doi.org/10.1186/s12863-021-01019-5
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author Zhang, Ke
Xu, Pan-Ling
Li, Yu-Jie
Dong, Shu
Gao, Hui-Feng
Chen, Lian-Yu
Chen, Hao
Chen, Zhen
author_facet Zhang, Ke
Xu, Pan-Ling
Li, Yu-Jie
Dong, Shu
Gao, Hui-Feng
Chen, Lian-Yu
Chen, Hao
Chen, Zhen
author_sort Zhang, Ke
collection PubMed
description BACKGROUND: Pancreatic cancer (PC) is a highly lethal disease and an increasing cause of cancer-associated mortality worldwide. Interferon regulatory factors (IRFs) play vital roles in immune response and tumor cellular biological processes. However, the specific functions of IRFs in PC and tumor immune response are far from systematically clarified. This study aimed to explorer the expression profile, prognostic significance, and biological function of IRFs in PC. RESULTS: We observed that the levels of IRF2, 6, 7, 8, and 9 were elevated in tumor compared to normal tissues in PC. IRF7 expression was significantly associated with patients’ pathology stage in PC. PC patients with high IRF2, low IRF3, and high IRF6 levels had significantly poorer overall survival. High mRNA expression, amplification and, deep deletion were the three most common types of genetic alterations of IRFs in PC. Low expression of IRF2, 4, 5, and 8 was resistant to most of the drugs or small molecules from Genomics of Drug Sensitivity in Cancer. Moreover, IRFs were positively correlated with the abundance of tumor infiltrating immune cells in PC, including B cells, CD8+ T cells, CD4+ T cells, macrophages, Neutrophil, and Dendritic cells. Functional analysis indicated that IRFs were involved in T cell receptor signaling pathway, immune response, and Toll-like receptor signaling pathway. CONCLUSIONS: Our results indicated that certain IRFs could serve as potential therapeutic targets and prognostic biomarkers for PC patients. Further basic and clinical studies are needed to validate our findings and generalize the clinical application of IRFs in PC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-021-01019-5.
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spelling pubmed-87512982022-01-18 Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer Zhang, Ke Xu, Pan-Ling Li, Yu-Jie Dong, Shu Gao, Hui-Feng Chen, Lian-Yu Chen, Hao Chen, Zhen BMC Genom Data Research BACKGROUND: Pancreatic cancer (PC) is a highly lethal disease and an increasing cause of cancer-associated mortality worldwide. Interferon regulatory factors (IRFs) play vital roles in immune response and tumor cellular biological processes. However, the specific functions of IRFs in PC and tumor immune response are far from systematically clarified. This study aimed to explorer the expression profile, prognostic significance, and biological function of IRFs in PC. RESULTS: We observed that the levels of IRF2, 6, 7, 8, and 9 were elevated in tumor compared to normal tissues in PC. IRF7 expression was significantly associated with patients’ pathology stage in PC. PC patients with high IRF2, low IRF3, and high IRF6 levels had significantly poorer overall survival. High mRNA expression, amplification and, deep deletion were the three most common types of genetic alterations of IRFs in PC. Low expression of IRF2, 4, 5, and 8 was resistant to most of the drugs or small molecules from Genomics of Drug Sensitivity in Cancer. Moreover, IRFs were positively correlated with the abundance of tumor infiltrating immune cells in PC, including B cells, CD8+ T cells, CD4+ T cells, macrophages, Neutrophil, and Dendritic cells. Functional analysis indicated that IRFs were involved in T cell receptor signaling pathway, immune response, and Toll-like receptor signaling pathway. CONCLUSIONS: Our results indicated that certain IRFs could serve as potential therapeutic targets and prognostic biomarkers for PC patients. Further basic and clinical studies are needed to validate our findings and generalize the clinical application of IRFs in PC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-021-01019-5. BioMed Central 2022-01-10 /pmc/articles/PMC8751298/ /pubmed/35012444 http://dx.doi.org/10.1186/s12863-021-01019-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Zhang, Ke
Xu, Pan-Ling
Li, Yu-Jie
Dong, Shu
Gao, Hui-Feng
Chen, Lian-Yu
Chen, Hao
Chen, Zhen
Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer
title Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer
title_full Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer
title_fullStr Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer
title_full_unstemmed Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer
title_short Comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer
title_sort comprehensive analysis of expression profile and prognostic significance of interferon regulatory factors in pancreatic cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8751298/
https://www.ncbi.nlm.nih.gov/pubmed/35012444
http://dx.doi.org/10.1186/s12863-021-01019-5
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