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An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma

Objective: Using model algorithms, we constructed an immune-related long non-coding RNAs (lncRNAs) risk coefficient model to predict outcomes for patients with clear cell renal cell carcinoma (ccRCC) to understand the infiltration of tumor immune cells and the sensitivity to immune-targeted drugs. M...

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Autores principales: Tang, Cheng, Qu, GenYi, Xu, Yong, Yang, Guang, Wang, Jiawei, Xiang, Maolin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8751591/
https://www.ncbi.nlm.nih.gov/pubmed/34954690
http://dx.doi.org/10.18632/aging.203797
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author Tang, Cheng
Qu, GenYi
Xu, Yong
Yang, Guang
Wang, Jiawei
Xiang, Maolin
author_facet Tang, Cheng
Qu, GenYi
Xu, Yong
Yang, Guang
Wang, Jiawei
Xiang, Maolin
author_sort Tang, Cheng
collection PubMed
description Objective: Using model algorithms, we constructed an immune-related long non-coding RNAs (lncRNAs) risk coefficient model to predict outcomes for patients with clear cell renal cell carcinoma (ccRCC) to understand the infiltration of tumor immune cells and the sensitivity to immune-targeted drugs. Methods: Open genes data were downloaded from The Cancer Genome Atlas and The Immunology Database and Analysis Portal, and immune-related lncRNAs were obtained through Pearson correlation analysis. R language software was used to obtain differentially expressed immune-related lncRNAs and immune-related lncRNA pairs. The model was constructed using least absolute shrinkage and selector operation regression analysis, and receiver operator characteristic curves were drawn. The Akaike information criterion was used to distinguish the high-risk from the low-risk group. We also conducted correlation analysis for the high- and low-risk subgroups. Results: We identified 27 immune-related lncRNAs pairs, 16 of which were included in the model construction. After merging clinical data, the areas under the curve of 1 -year, 3-year, and 5-year survival times of ccRCC patients were 0.867, 0.832, and 0.838, respectively. Subgroup analyses were conducted according to the cut-off value. We found that the high-risk group was associated with poor outcomes. The risk score and tumor stage were independent predictors of the outcome of ccRCC. The risk model predicted specific immune cell infiltration, immune checkpoint gene expression levels, and high-risk groups more sensitive to sunitinib targeted therapy. Conclusion: We obtained prognostic-related novel ccRCC markers and risk model that predicts the outcome of patients with ccRCC and helps identify those who can benefit from sunitinib.
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spelling pubmed-87515912022-01-12 An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma Tang, Cheng Qu, GenYi Xu, Yong Yang, Guang Wang, Jiawei Xiang, Maolin Aging (Albany NY) Research Paper Objective: Using model algorithms, we constructed an immune-related long non-coding RNAs (lncRNAs) risk coefficient model to predict outcomes for patients with clear cell renal cell carcinoma (ccRCC) to understand the infiltration of tumor immune cells and the sensitivity to immune-targeted drugs. Methods: Open genes data were downloaded from The Cancer Genome Atlas and The Immunology Database and Analysis Portal, and immune-related lncRNAs were obtained through Pearson correlation analysis. R language software was used to obtain differentially expressed immune-related lncRNAs and immune-related lncRNA pairs. The model was constructed using least absolute shrinkage and selector operation regression analysis, and receiver operator characteristic curves were drawn. The Akaike information criterion was used to distinguish the high-risk from the low-risk group. We also conducted correlation analysis for the high- and low-risk subgroups. Results: We identified 27 immune-related lncRNAs pairs, 16 of which were included in the model construction. After merging clinical data, the areas under the curve of 1 -year, 3-year, and 5-year survival times of ccRCC patients were 0.867, 0.832, and 0.838, respectively. Subgroup analyses were conducted according to the cut-off value. We found that the high-risk group was associated with poor outcomes. The risk score and tumor stage were independent predictors of the outcome of ccRCC. The risk model predicted specific immune cell infiltration, immune checkpoint gene expression levels, and high-risk groups more sensitive to sunitinib targeted therapy. Conclusion: We obtained prognostic-related novel ccRCC markers and risk model that predicts the outcome of patients with ccRCC and helps identify those who can benefit from sunitinib. Impact Journals 2021-12-26 /pmc/articles/PMC8751591/ /pubmed/34954690 http://dx.doi.org/10.18632/aging.203797 Text en Copyright: © 2021 Tang et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Tang, Cheng
Qu, GenYi
Xu, Yong
Yang, Guang
Wang, Jiawei
Xiang, Maolin
An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma
title An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma
title_full An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma
title_fullStr An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma
title_full_unstemmed An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma
title_short An immune-related lncRNA risk coefficient model to predict the outcomes in clear cell renal cell carcinoma
title_sort immune-related lncrna risk coefficient model to predict the outcomes in clear cell renal cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8751591/
https://www.ncbi.nlm.nih.gov/pubmed/34954690
http://dx.doi.org/10.18632/aging.203797
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