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Candidate Genes of Allergic Dermatitis Are Associated with Immune Response

Allergic dermatitis (AD) is a common and burdensome inflammatory skin disease, and diagnosis is challenging. This study was conducted to identify candidate genes for AD diagnosis and underlying molecular mechanisms. Gene expression profiles were obtained from datasets GSE121212, GSE130588, and GSE15...

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Detalles Bibliográficos
Autores principales: Jin, Lei, Deng, Lin, Wang, Wanchun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8752225/
https://www.ncbi.nlm.nih.gov/pubmed/35028126
http://dx.doi.org/10.1155/2022/8745722
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author Jin, Lei
Deng, Lin
Wang, Wanchun
author_facet Jin, Lei
Deng, Lin
Wang, Wanchun
author_sort Jin, Lei
collection PubMed
description Allergic dermatitis (AD) is a common and burdensome inflammatory skin disease, and diagnosis is challenging. This study was conducted to identify candidate genes for AD diagnosis and underlying molecular mechanisms. Gene expression profiles were obtained from datasets GSE121212, GSE130588, and GSE157194. Use differential analysis to identify differentially expressed genes (DEGs) between AD and control. Use enrichment analysis to identify potential molecular dysregulation mechanisms. Comprehensive least absolute shrinkage and selection operator (LASSO) logistic regression, receiver operator characteristic (ROC) curve, and logistic regression analysis are used to identify candidate genes. In addition, ssGSEA and ImmPort database were used to identify AD-related immune response abnormalities. In this study, a total of 60 common genes were identified. Enrichment analysis found that these genes are mainly involved in Th17 cell immune and complement and coagulation cascades. LASSO regression analysis identified 18 feature genes, and screened genes with AUC >0.75 were selected as candidate genes. Finally, PLA2G4D, IFI6, AGR3, IGFL1, SPRR3, ATP13A5, SERPINB13, KRT16, HAS3, and CH25H were recognized as candidate genes and may be able to diagnose AD. PLA2G4D, CH25H, and IFI6 may be risk factors for AD based on logistic analysis. Furthermore, we identified the abnormalities of immune response activation in AD patients. Interestingly, PLA2G4D, CH25H, and IFI6 had positive correlations with immune cells and signaling pathways. PLA2G4D, CH25H, and IFI6 may be candidate diagnostic genes for AD. This may be related to their promotion of abnormal immune activation, especially Th17 cell immune.
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spelling pubmed-87522252022-01-12 Candidate Genes of Allergic Dermatitis Are Associated with Immune Response Jin, Lei Deng, Lin Wang, Wanchun J Healthc Eng Research Article Allergic dermatitis (AD) is a common and burdensome inflammatory skin disease, and diagnosis is challenging. This study was conducted to identify candidate genes for AD diagnosis and underlying molecular mechanisms. Gene expression profiles were obtained from datasets GSE121212, GSE130588, and GSE157194. Use differential analysis to identify differentially expressed genes (DEGs) between AD and control. Use enrichment analysis to identify potential molecular dysregulation mechanisms. Comprehensive least absolute shrinkage and selection operator (LASSO) logistic regression, receiver operator characteristic (ROC) curve, and logistic regression analysis are used to identify candidate genes. In addition, ssGSEA and ImmPort database were used to identify AD-related immune response abnormalities. In this study, a total of 60 common genes were identified. Enrichment analysis found that these genes are mainly involved in Th17 cell immune and complement and coagulation cascades. LASSO regression analysis identified 18 feature genes, and screened genes with AUC >0.75 were selected as candidate genes. Finally, PLA2G4D, IFI6, AGR3, IGFL1, SPRR3, ATP13A5, SERPINB13, KRT16, HAS3, and CH25H were recognized as candidate genes and may be able to diagnose AD. PLA2G4D, CH25H, and IFI6 may be risk factors for AD based on logistic analysis. Furthermore, we identified the abnormalities of immune response activation in AD patients. Interestingly, PLA2G4D, CH25H, and IFI6 had positive correlations with immune cells and signaling pathways. PLA2G4D, CH25H, and IFI6 may be candidate diagnostic genes for AD. This may be related to their promotion of abnormal immune activation, especially Th17 cell immune. Hindawi 2022-01-04 /pmc/articles/PMC8752225/ /pubmed/35028126 http://dx.doi.org/10.1155/2022/8745722 Text en Copyright © 2022 Lei Jin et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Jin, Lei
Deng, Lin
Wang, Wanchun
Candidate Genes of Allergic Dermatitis Are Associated with Immune Response
title Candidate Genes of Allergic Dermatitis Are Associated with Immune Response
title_full Candidate Genes of Allergic Dermatitis Are Associated with Immune Response
title_fullStr Candidate Genes of Allergic Dermatitis Are Associated with Immune Response
title_full_unstemmed Candidate Genes of Allergic Dermatitis Are Associated with Immune Response
title_short Candidate Genes of Allergic Dermatitis Are Associated with Immune Response
title_sort candidate genes of allergic dermatitis are associated with immune response
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8752225/
https://www.ncbi.nlm.nih.gov/pubmed/35028126
http://dx.doi.org/10.1155/2022/8745722
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