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Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator

Synthetic Biology aims to create predictable biological circuits and fully operational biological systems. Although there are methods to create more stable oscillators, such as repressilators, independently controlling the oscillation of reporter genes in terms of their amplitude and period is only...

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Autores principales: Zhang, Fengyu, Sun, Yanhong, Zhang, Yihao, Shen, Wenting, Wang, Shujing, Ouyang, Qi, Luo, Chunxiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8752629/
https://www.ncbi.nlm.nih.gov/pubmed/35017621
http://dx.doi.org/10.1038/s42003-021-02987-1
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author Zhang, Fengyu
Sun, Yanhong
Zhang, Yihao
Shen, Wenting
Wang, Shujing
Ouyang, Qi
Luo, Chunxiong
author_facet Zhang, Fengyu
Sun, Yanhong
Zhang, Yihao
Shen, Wenting
Wang, Shujing
Ouyang, Qi
Luo, Chunxiong
author_sort Zhang, Fengyu
collection PubMed
description Synthetic Biology aims to create predictable biological circuits and fully operational biological systems. Although there are methods to create more stable oscillators, such as repressilators, independently controlling the oscillation of reporter genes in terms of their amplitude and period is only on theoretical level. Here, we introduce a new oscillator circuit that can be independently controlled by two inducers in Escherichia coli. Some control components, including σECF11 and NahR, were added to the circuit. By systematically tuning the concentration of the inducers, salicylate and IPTG, the amplitude and period can be modulated independently. Furthermore, we constructed a quantitative model to forecast the regulation results. Under the guidance of the model, the expected oscillation can be regulated by choosing the proper concentration combinations of inducers. In summary, our work achieved independent control of the oscillator circuit, which allows the oscillator to be modularized and used in more complex circuit designs.
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spelling pubmed-87526292022-01-20 Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator Zhang, Fengyu Sun, Yanhong Zhang, Yihao Shen, Wenting Wang, Shujing Ouyang, Qi Luo, Chunxiong Commun Biol Article Synthetic Biology aims to create predictable biological circuits and fully operational biological systems. Although there are methods to create more stable oscillators, such as repressilators, independently controlling the oscillation of reporter genes in terms of their amplitude and period is only on theoretical level. Here, we introduce a new oscillator circuit that can be independently controlled by two inducers in Escherichia coli. Some control components, including σECF11 and NahR, were added to the circuit. By systematically tuning the concentration of the inducers, salicylate and IPTG, the amplitude and period can be modulated independently. Furthermore, we constructed a quantitative model to forecast the regulation results. Under the guidance of the model, the expected oscillation can be regulated by choosing the proper concentration combinations of inducers. In summary, our work achieved independent control of the oscillator circuit, which allows the oscillator to be modularized and used in more complex circuit designs. Nature Publishing Group UK 2022-01-11 /pmc/articles/PMC8752629/ /pubmed/35017621 http://dx.doi.org/10.1038/s42003-021-02987-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhang, Fengyu
Sun, Yanhong
Zhang, Yihao
Shen, Wenting
Wang, Shujing
Ouyang, Qi
Luo, Chunxiong
Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator
title Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator
title_full Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator
title_fullStr Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator
title_full_unstemmed Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator
title_short Independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator
title_sort independent control of amplitude and period in a synthetic oscillator circuit with modified repressilator
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8752629/
https://www.ncbi.nlm.nih.gov/pubmed/35017621
http://dx.doi.org/10.1038/s42003-021-02987-1
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