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Simple epidemic models with segmentation can be better than complex ones
Given a sequence of epidemic events, can a single epidemic model capture its dynamics during the entire period? How should we divide the sequence into segments to better capture the dynamics? Throughout human history, infectious diseases (e.g., the Black Death and COVID-19) have been serious threats...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8754337/ https://www.ncbi.nlm.nih.gov/pubmed/35020775 http://dx.doi.org/10.1371/journal.pone.0262244 |
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author | Lee, Geon Yoon, Se-eun Shin, Kijung |
author_facet | Lee, Geon Yoon, Se-eun Shin, Kijung |
author_sort | Lee, Geon |
collection | PubMed |
description | Given a sequence of epidemic events, can a single epidemic model capture its dynamics during the entire period? How should we divide the sequence into segments to better capture the dynamics? Throughout human history, infectious diseases (e.g., the Black Death and COVID-19) have been serious threats. Consequently, understanding and forecasting the evolving patterns of epidemic events are critical for prevention and decision making. To this end, epidemic models based on ordinary differential equations (ODEs), which effectively describe dynamic systems in many fields, have been employed. However, a single epidemic model is not enough to capture long-term dynamics of epidemic events especially when the dynamics heavily depend on external factors (e.g., lockdown and the capability to perform tests). In this work, we demonstrate that properly dividing the event sequence regarding COVID-19 (specifically, the numbers of active cases, recoveries, and deaths) into multiple segments and fitting a simple epidemic model to each segment leads to a better fit with fewer parameters than fitting a complex model to the entire sequence. Moreover, we propose a methodology for balancing the number of segments and the complexity of epidemic models, based on the Minimum Description Length principle. Our methodology is (a) Automatic: not requiring any user-defined parameters, (b) Model-agnostic: applicable to any ODE-based epidemic models, and (c) Effective: effectively describing and forecasting the spread of COVID-19 in 70 countries. |
format | Online Article Text |
id | pubmed-8754337 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-87543372022-01-13 Simple epidemic models with segmentation can be better than complex ones Lee, Geon Yoon, Se-eun Shin, Kijung PLoS One Research Article Given a sequence of epidemic events, can a single epidemic model capture its dynamics during the entire period? How should we divide the sequence into segments to better capture the dynamics? Throughout human history, infectious diseases (e.g., the Black Death and COVID-19) have been serious threats. Consequently, understanding and forecasting the evolving patterns of epidemic events are critical for prevention and decision making. To this end, epidemic models based on ordinary differential equations (ODEs), which effectively describe dynamic systems in many fields, have been employed. However, a single epidemic model is not enough to capture long-term dynamics of epidemic events especially when the dynamics heavily depend on external factors (e.g., lockdown and the capability to perform tests). In this work, we demonstrate that properly dividing the event sequence regarding COVID-19 (specifically, the numbers of active cases, recoveries, and deaths) into multiple segments and fitting a simple epidemic model to each segment leads to a better fit with fewer parameters than fitting a complex model to the entire sequence. Moreover, we propose a methodology for balancing the number of segments and the complexity of epidemic models, based on the Minimum Description Length principle. Our methodology is (a) Automatic: not requiring any user-defined parameters, (b) Model-agnostic: applicable to any ODE-based epidemic models, and (c) Effective: effectively describing and forecasting the spread of COVID-19 in 70 countries. Public Library of Science 2022-01-12 /pmc/articles/PMC8754337/ /pubmed/35020775 http://dx.doi.org/10.1371/journal.pone.0262244 Text en © 2022 Lee et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lee, Geon Yoon, Se-eun Shin, Kijung Simple epidemic models with segmentation can be better than complex ones |
title | Simple epidemic models with segmentation can be better than complex ones |
title_full | Simple epidemic models with segmentation can be better than complex ones |
title_fullStr | Simple epidemic models with segmentation can be better than complex ones |
title_full_unstemmed | Simple epidemic models with segmentation can be better than complex ones |
title_short | Simple epidemic models with segmentation can be better than complex ones |
title_sort | simple epidemic models with segmentation can be better than complex ones |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8754337/ https://www.ncbi.nlm.nih.gov/pubmed/35020775 http://dx.doi.org/10.1371/journal.pone.0262244 |
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