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Systematic investigation of the link between enzyme catalysis and cold adaptation

Cold temperature is prevalent across the biosphere and slows the rates of chemical reactions. Increased catalysis has been predicted to be a dominant adaptive trait of enzymes to reduced temperature, and this expectation has informed physical models for enzyme catalysis and influenced bioprospecting...

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Autores principales: Stark, Catherine, Bautista-Leung, Teanna, Siegfried, Joanna, Herschlag, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8754429/
https://www.ncbi.nlm.nih.gov/pubmed/35019838
http://dx.doi.org/10.7554/eLife.72884
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author Stark, Catherine
Bautista-Leung, Teanna
Siegfried, Joanna
Herschlag, Daniel
author_facet Stark, Catherine
Bautista-Leung, Teanna
Siegfried, Joanna
Herschlag, Daniel
author_sort Stark, Catherine
collection PubMed
description Cold temperature is prevalent across the biosphere and slows the rates of chemical reactions. Increased catalysis has been predicted to be a dominant adaptive trait of enzymes to reduced temperature, and this expectation has informed physical models for enzyme catalysis and influenced bioprospecting strategies. To systematically test rate enhancement as an adaptive trait to cold, we paired kinetic constants of 2223 enzyme reactions with their organism’s optimal growth temperature (T(Growth)) and analyzed trends of rate constants as a function of T(Growth). These data do not support a general increase in rate enhancement in cold adaptation. In the model enzyme ketosteroid isomerase (KSI), there is prior evidence for temperature adaptation from a change in an active site residue that results in a tradeoff between activity and stability. Nevertheless, we found that little of the rate constant variation for 20 KSI variants was accounted for by T(Growth). In contrast, and consistent with prior expectations, we observed a correlation between stability and T(Growth) across 433 proteins. These results suggest that temperature exerts a weaker selection pressure on enzyme rate constants than stability and that evolutionary forces other than temperature are responsible for the majority of enzymatic rate constant variation.
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spelling pubmed-87544292022-01-13 Systematic investigation of the link between enzyme catalysis and cold adaptation Stark, Catherine Bautista-Leung, Teanna Siegfried, Joanna Herschlag, Daniel eLife Biochemistry and Chemical Biology Cold temperature is prevalent across the biosphere and slows the rates of chemical reactions. Increased catalysis has been predicted to be a dominant adaptive trait of enzymes to reduced temperature, and this expectation has informed physical models for enzyme catalysis and influenced bioprospecting strategies. To systematically test rate enhancement as an adaptive trait to cold, we paired kinetic constants of 2223 enzyme reactions with their organism’s optimal growth temperature (T(Growth)) and analyzed trends of rate constants as a function of T(Growth). These data do not support a general increase in rate enhancement in cold adaptation. In the model enzyme ketosteroid isomerase (KSI), there is prior evidence for temperature adaptation from a change in an active site residue that results in a tradeoff between activity and stability. Nevertheless, we found that little of the rate constant variation for 20 KSI variants was accounted for by T(Growth). In contrast, and consistent with prior expectations, we observed a correlation between stability and T(Growth) across 433 proteins. These results suggest that temperature exerts a weaker selection pressure on enzyme rate constants than stability and that evolutionary forces other than temperature are responsible for the majority of enzymatic rate constant variation. eLife Sciences Publications, Ltd 2022-01-12 /pmc/articles/PMC8754429/ /pubmed/35019838 http://dx.doi.org/10.7554/eLife.72884 Text en © 2022, Stark et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Biochemistry and Chemical Biology
Stark, Catherine
Bautista-Leung, Teanna
Siegfried, Joanna
Herschlag, Daniel
Systematic investigation of the link between enzyme catalysis and cold adaptation
title Systematic investigation of the link between enzyme catalysis and cold adaptation
title_full Systematic investigation of the link between enzyme catalysis and cold adaptation
title_fullStr Systematic investigation of the link between enzyme catalysis and cold adaptation
title_full_unstemmed Systematic investigation of the link between enzyme catalysis and cold adaptation
title_short Systematic investigation of the link between enzyme catalysis and cold adaptation
title_sort systematic investigation of the link between enzyme catalysis and cold adaptation
topic Biochemistry and Chemical Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8754429/
https://www.ncbi.nlm.nih.gov/pubmed/35019838
http://dx.doi.org/10.7554/eLife.72884
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