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Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance

BACKGROUND: Potential therapy and confounding factors including typical co‐administered medications, patient’s disease states, disease prevalence, patient demographics, medical histories, and reasons for prescribing a drug often are incomplete, conflicting, missing, or uncharacterized in spontaneous...

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Autores principales: Xu, Xuan, Kawakami, Jessica, Millagaha Gedara, Nuwan Indika, Riviere, Jim E, Meyer, Emma, Wyckoff, Gerald J, Jaberi-Douraki, Majid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8754433/
https://www.ncbi.nlm.nih.gov/pubmed/34812146
http://dx.doi.org/10.7554/eLife.70734
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author Xu, Xuan
Kawakami, Jessica
Millagaha Gedara, Nuwan Indika
Riviere, Jim E
Meyer, Emma
Wyckoff, Gerald J
Jaberi-Douraki, Majid
author_facet Xu, Xuan
Kawakami, Jessica
Millagaha Gedara, Nuwan Indika
Riviere, Jim E
Meyer, Emma
Wyckoff, Gerald J
Jaberi-Douraki, Majid
author_sort Xu, Xuan
collection PubMed
description BACKGROUND: Potential therapy and confounding factors including typical co‐administered medications, patient’s disease states, disease prevalence, patient demographics, medical histories, and reasons for prescribing a drug often are incomplete, conflicting, missing, or uncharacterized in spontaneous adverse drug event (ADE) reporting systems. These missing or incomplete features can affect and limit the application of quantitative methods in pharmacovigilance for meta-analyses of data during randomized clinical trials. METHODS: Data from patients with hypertension were retrieved and integrated from the FDA Adverse Event Reporting System; 134 antihypertensive drugs out of 1131 drugs were filtered and then evaluated using the empirical Bayes geometric mean (EBGM) of the posterior distribution to build ADE-drug profiles with an emphasis on the pulmonary ADEs. Afterward, the graphical least absolute shrinkage and selection operator (GLASSO) captured drug associations based on pulmonary ADEs by correcting hidden factors and confounder misclassification. Selected drugs were then compared using the Friedman test in drug classes and clusters obtained from GLASSO. RESULTS: Following multiple filtering stages to exclude insignificant and noise-driven reports, we found that drugs from antihypertensives agents, urologicals, and antithrombotic agents (macitentan, bosentan, epoprostenol, selexipag, sildenafil, tadalafil, and beraprost) form a similar class with a significantly higher incidence of pulmonary ADEs. Macitentan and bosentan were associated with 64% and 56% of pulmonary ADEs, respectively. Because these two medications are prescribed in diseases affecting pulmonary function and may be likely to emerge among the highest reported pulmonary ADEs, in fact, they serve to validate the methods utilized here. Conversely, doxazosin and rilmenidine were found to have the least pulmonary ADEs in selected drugs from hypertension patients. Nifedipine and candesartan were also found by signal detection methods to form a drug cluster, shown by several studies an effective combination of these drugs on lowering blood pressure and appeared an improved side effect profile in comparison with single-agent monotherapy. CONCLUSIONS: We consider pulmonary ADE profiles in multiple long-standing groups of therapeutics including antihypertensive agents, antithrombotic agents, beta-blocking agents, calcium channel blockers, or agents acting on the renin-angiotensin system, in patients with hypertension associated with high risk for coronavirus disease 2019 (COVID-19). We found that several individual drugs have significant differences between their drug classes and compared to other drug classes. For instance, macitentan and bosentan from endothelin receptor antagonists show major concern while doxazosin and rilmenidine exhibited the least pulmonary ADEs compared to the outcomes of other drugs. Using techniques in this study, we assessed and confirmed the hypothesis that drugs from the same drug class could have very different pulmonary ADE profiles affecting outcomes in acute respiratory illness. FUNDING: GJW and MJD accepted funding from BioNexus KC for funding on this project, but BioNexus KC had no direct role in this article.
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spelling pubmed-87544332022-01-13 Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance Xu, Xuan Kawakami, Jessica Millagaha Gedara, Nuwan Indika Riviere, Jim E Meyer, Emma Wyckoff, Gerald J Jaberi-Douraki, Majid eLife Computational and Systems Biology BACKGROUND: Potential therapy and confounding factors including typical co‐administered medications, patient’s disease states, disease prevalence, patient demographics, medical histories, and reasons for prescribing a drug often are incomplete, conflicting, missing, or uncharacterized in spontaneous adverse drug event (ADE) reporting systems. These missing or incomplete features can affect and limit the application of quantitative methods in pharmacovigilance for meta-analyses of data during randomized clinical trials. METHODS: Data from patients with hypertension were retrieved and integrated from the FDA Adverse Event Reporting System; 134 antihypertensive drugs out of 1131 drugs were filtered and then evaluated using the empirical Bayes geometric mean (EBGM) of the posterior distribution to build ADE-drug profiles with an emphasis on the pulmonary ADEs. Afterward, the graphical least absolute shrinkage and selection operator (GLASSO) captured drug associations based on pulmonary ADEs by correcting hidden factors and confounder misclassification. Selected drugs were then compared using the Friedman test in drug classes and clusters obtained from GLASSO. RESULTS: Following multiple filtering stages to exclude insignificant and noise-driven reports, we found that drugs from antihypertensives agents, urologicals, and antithrombotic agents (macitentan, bosentan, epoprostenol, selexipag, sildenafil, tadalafil, and beraprost) form a similar class with a significantly higher incidence of pulmonary ADEs. Macitentan and bosentan were associated with 64% and 56% of pulmonary ADEs, respectively. Because these two medications are prescribed in diseases affecting pulmonary function and may be likely to emerge among the highest reported pulmonary ADEs, in fact, they serve to validate the methods utilized here. Conversely, doxazosin and rilmenidine were found to have the least pulmonary ADEs in selected drugs from hypertension patients. Nifedipine and candesartan were also found by signal detection methods to form a drug cluster, shown by several studies an effective combination of these drugs on lowering blood pressure and appeared an improved side effect profile in comparison with single-agent monotherapy. CONCLUSIONS: We consider pulmonary ADE profiles in multiple long-standing groups of therapeutics including antihypertensive agents, antithrombotic agents, beta-blocking agents, calcium channel blockers, or agents acting on the renin-angiotensin system, in patients with hypertension associated with high risk for coronavirus disease 2019 (COVID-19). We found that several individual drugs have significant differences between their drug classes and compared to other drug classes. For instance, macitentan and bosentan from endothelin receptor antagonists show major concern while doxazosin and rilmenidine exhibited the least pulmonary ADEs compared to the outcomes of other drugs. Using techniques in this study, we assessed and confirmed the hypothesis that drugs from the same drug class could have very different pulmonary ADE profiles affecting outcomes in acute respiratory illness. FUNDING: GJW and MJD accepted funding from BioNexus KC for funding on this project, but BioNexus KC had no direct role in this article. eLife Sciences Publications, Ltd 2021-11-23 /pmc/articles/PMC8754433/ /pubmed/34812146 http://dx.doi.org/10.7554/eLife.70734 Text en © 2021, Xu et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Computational and Systems Biology
Xu, Xuan
Kawakami, Jessica
Millagaha Gedara, Nuwan Indika
Riviere, Jim E
Meyer, Emma
Wyckoff, Gerald J
Jaberi-Douraki, Majid
Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance
title Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance
title_full Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance
title_fullStr Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance
title_full_unstemmed Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance
title_short Data mining methodology for response to hypertension symptomology—application to COVID-19-related pharmacovigilance
title_sort data mining methodology for response to hypertension symptomology—application to covid-19-related pharmacovigilance
topic Computational and Systems Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8754433/
https://www.ncbi.nlm.nih.gov/pubmed/34812146
http://dx.doi.org/10.7554/eLife.70734
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