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Neural network classifiers for images of genetic conditions with cutaneous manifestations

Neural networks have shown strong potential in research and in healthcare. Mainly due to the need for large datasets, these applications have focused on common medical conditions, where more data are typically available. Leveraging publicly available data, we trained a neural network classifier on i...

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Autores principales: Duong, Dat, Waikel, Rebekah L., Hu, Ping, Tekendo-Ngongang, Cedrik, Solomon, Benjamin D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8756521/
https://www.ncbi.nlm.nih.gov/pubmed/35047844
http://dx.doi.org/10.1016/j.xhgg.2021.100053
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author Duong, Dat
Waikel, Rebekah L.
Hu, Ping
Tekendo-Ngongang, Cedrik
Solomon, Benjamin D.
author_facet Duong, Dat
Waikel, Rebekah L.
Hu, Ping
Tekendo-Ngongang, Cedrik
Solomon, Benjamin D.
author_sort Duong, Dat
collection PubMed
description Neural networks have shown strong potential in research and in healthcare. Mainly due to the need for large datasets, these applications have focused on common medical conditions, where more data are typically available. Leveraging publicly available data, we trained a neural network classifier on images of rare genetic conditions with skin findings. We used approximately 100 images per condition to classify 6 different genetic conditions. We analyzed both preprocessed images that were cropped to show only the skin lesions as well as more complex images showing features such as the entire body segment, the person, and/or the background. The classifier construction process included attribution methods to visualize which pixels were most important for computer-based classification. Our classifier was significantly more accurate than pediatricians or medical geneticists for both types of images and suggests steps for further research involving clinical scenarios and other applications.
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spelling pubmed-87565212022-01-18 Neural network classifiers for images of genetic conditions with cutaneous manifestations Duong, Dat Waikel, Rebekah L. Hu, Ping Tekendo-Ngongang, Cedrik Solomon, Benjamin D. HGG Adv Article Neural networks have shown strong potential in research and in healthcare. Mainly due to the need for large datasets, these applications have focused on common medical conditions, where more data are typically available. Leveraging publicly available data, we trained a neural network classifier on images of rare genetic conditions with skin findings. We used approximately 100 images per condition to classify 6 different genetic conditions. We analyzed both preprocessed images that were cropped to show only the skin lesions as well as more complex images showing features such as the entire body segment, the person, and/or the background. The classifier construction process included attribution methods to visualize which pixels were most important for computer-based classification. Our classifier was significantly more accurate than pediatricians or medical geneticists for both types of images and suggests steps for further research involving clinical scenarios and other applications. Elsevier 2021-08-20 /pmc/articles/PMC8756521/ /pubmed/35047844 http://dx.doi.org/10.1016/j.xhgg.2021.100053 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Duong, Dat
Waikel, Rebekah L.
Hu, Ping
Tekendo-Ngongang, Cedrik
Solomon, Benjamin D.
Neural network classifiers for images of genetic conditions with cutaneous manifestations
title Neural network classifiers for images of genetic conditions with cutaneous manifestations
title_full Neural network classifiers for images of genetic conditions with cutaneous manifestations
title_fullStr Neural network classifiers for images of genetic conditions with cutaneous manifestations
title_full_unstemmed Neural network classifiers for images of genetic conditions with cutaneous manifestations
title_short Neural network classifiers for images of genetic conditions with cutaneous manifestations
title_sort neural network classifiers for images of genetic conditions with cutaneous manifestations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8756521/
https://www.ncbi.nlm.nih.gov/pubmed/35047844
http://dx.doi.org/10.1016/j.xhgg.2021.100053
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