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Neural network classifiers for images of genetic conditions with cutaneous manifestations
Neural networks have shown strong potential in research and in healthcare. Mainly due to the need for large datasets, these applications have focused on common medical conditions, where more data are typically available. Leveraging publicly available data, we trained a neural network classifier on i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8756521/ https://www.ncbi.nlm.nih.gov/pubmed/35047844 http://dx.doi.org/10.1016/j.xhgg.2021.100053 |
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author | Duong, Dat Waikel, Rebekah L. Hu, Ping Tekendo-Ngongang, Cedrik Solomon, Benjamin D. |
author_facet | Duong, Dat Waikel, Rebekah L. Hu, Ping Tekendo-Ngongang, Cedrik Solomon, Benjamin D. |
author_sort | Duong, Dat |
collection | PubMed |
description | Neural networks have shown strong potential in research and in healthcare. Mainly due to the need for large datasets, these applications have focused on common medical conditions, where more data are typically available. Leveraging publicly available data, we trained a neural network classifier on images of rare genetic conditions with skin findings. We used approximately 100 images per condition to classify 6 different genetic conditions. We analyzed both preprocessed images that were cropped to show only the skin lesions as well as more complex images showing features such as the entire body segment, the person, and/or the background. The classifier construction process included attribution methods to visualize which pixels were most important for computer-based classification. Our classifier was significantly more accurate than pediatricians or medical geneticists for both types of images and suggests steps for further research involving clinical scenarios and other applications. |
format | Online Article Text |
id | pubmed-8756521 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-87565212022-01-18 Neural network classifiers for images of genetic conditions with cutaneous manifestations Duong, Dat Waikel, Rebekah L. Hu, Ping Tekendo-Ngongang, Cedrik Solomon, Benjamin D. HGG Adv Article Neural networks have shown strong potential in research and in healthcare. Mainly due to the need for large datasets, these applications have focused on common medical conditions, where more data are typically available. Leveraging publicly available data, we trained a neural network classifier on images of rare genetic conditions with skin findings. We used approximately 100 images per condition to classify 6 different genetic conditions. We analyzed both preprocessed images that were cropped to show only the skin lesions as well as more complex images showing features such as the entire body segment, the person, and/or the background. The classifier construction process included attribution methods to visualize which pixels were most important for computer-based classification. Our classifier was significantly more accurate than pediatricians or medical geneticists for both types of images and suggests steps for further research involving clinical scenarios and other applications. Elsevier 2021-08-20 /pmc/articles/PMC8756521/ /pubmed/35047844 http://dx.doi.org/10.1016/j.xhgg.2021.100053 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Duong, Dat Waikel, Rebekah L. Hu, Ping Tekendo-Ngongang, Cedrik Solomon, Benjamin D. Neural network classifiers for images of genetic conditions with cutaneous manifestations |
title | Neural network classifiers for images of genetic conditions with cutaneous manifestations |
title_full | Neural network classifiers for images of genetic conditions with cutaneous manifestations |
title_fullStr | Neural network classifiers for images of genetic conditions with cutaneous manifestations |
title_full_unstemmed | Neural network classifiers for images of genetic conditions with cutaneous manifestations |
title_short | Neural network classifiers for images of genetic conditions with cutaneous manifestations |
title_sort | neural network classifiers for images of genetic conditions with cutaneous manifestations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8756521/ https://www.ncbi.nlm.nih.gov/pubmed/35047844 http://dx.doi.org/10.1016/j.xhgg.2021.100053 |
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