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Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool

[Image: see text] Projects in chemo- and bioinformatics often consist of scattered data in various types and are difficult to access in a meaningful way for efficient data analysis. Data is usually too diverse to be even manipulated effectively. Sdfconf is data manipulation and analysis software to...

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Autores principales: Lätti, Sakari T., Niinivehmas, Sanna, Pentikäinen, Olli T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8757437/
https://www.ncbi.nlm.nih.gov/pubmed/34932340
http://dx.doi.org/10.1021/acs.jcim.1c01051
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author Lätti, Sakari T.
Niinivehmas, Sanna
Pentikäinen, Olli T.
author_facet Lätti, Sakari T.
Niinivehmas, Sanna
Pentikäinen, Olli T.
author_sort Lätti, Sakari T.
collection PubMed
description [Image: see text] Projects in chemo- and bioinformatics often consist of scattered data in various types and are difficult to access in a meaningful way for efficient data analysis. Data is usually too diverse to be even manipulated effectively. Sdfconf is data manipulation and analysis software to address this problem in a logical and robust manner. Other software commonly used for such tasks are either not designed with molecular and/or conformational data in mind or provide only a narrow set of tasks to be accomplished. Furthermore, many tools are only available within commercial software packages. Sdfconf is a flexible, robust, and free-of-charge tool for linking data from various sources for meaningful and efficient manipulation and analysis of molecule data sets. Sdfconf packages molecular structures and metadata into a complete ensemble, from which one can access both the whole data set and individual molecules and/or conformations. In this software note, we offer some practical examples of the utilization of sdfconf.
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spelling pubmed-87574372022-01-14 Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool Lätti, Sakari T. Niinivehmas, Sanna Pentikäinen, Olli T. J Chem Inf Model [Image: see text] Projects in chemo- and bioinformatics often consist of scattered data in various types and are difficult to access in a meaningful way for efficient data analysis. Data is usually too diverse to be even manipulated effectively. Sdfconf is data manipulation and analysis software to address this problem in a logical and robust manner. Other software commonly used for such tasks are either not designed with molecular and/or conformational data in mind or provide only a narrow set of tasks to be accomplished. Furthermore, many tools are only available within commercial software packages. Sdfconf is a flexible, robust, and free-of-charge tool for linking data from various sources for meaningful and efficient manipulation and analysis of molecule data sets. Sdfconf packages molecular structures and metadata into a complete ensemble, from which one can access both the whole data set and individual molecules and/or conformations. In this software note, we offer some practical examples of the utilization of sdfconf. American Chemical Society 2021-12-21 2022-01-10 /pmc/articles/PMC8757437/ /pubmed/34932340 http://dx.doi.org/10.1021/acs.jcim.1c01051 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Lätti, Sakari T.
Niinivehmas, Sanna
Pentikäinen, Olli T.
Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool
title Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool
title_full Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool
title_fullStr Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool
title_full_unstemmed Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool
title_short Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool
title_sort sdfconf: a novel, flexible, and robust molecular data management tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8757437/
https://www.ncbi.nlm.nih.gov/pubmed/34932340
http://dx.doi.org/10.1021/acs.jcim.1c01051
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