Cargando…
Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool
[Image: see text] Projects in chemo- and bioinformatics often consist of scattered data in various types and are difficult to access in a meaningful way for efficient data analysis. Data is usually too diverse to be even manipulated effectively. Sdfconf is data manipulation and analysis software to...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8757437/ https://www.ncbi.nlm.nih.gov/pubmed/34932340 http://dx.doi.org/10.1021/acs.jcim.1c01051 |
_version_ | 1784632680589033472 |
---|---|
author | Lätti, Sakari T. Niinivehmas, Sanna Pentikäinen, Olli T. |
author_facet | Lätti, Sakari T. Niinivehmas, Sanna Pentikäinen, Olli T. |
author_sort | Lätti, Sakari T. |
collection | PubMed |
description | [Image: see text] Projects in chemo- and bioinformatics often consist of scattered data in various types and are difficult to access in a meaningful way for efficient data analysis. Data is usually too diverse to be even manipulated effectively. Sdfconf is data manipulation and analysis software to address this problem in a logical and robust manner. Other software commonly used for such tasks are either not designed with molecular and/or conformational data in mind or provide only a narrow set of tasks to be accomplished. Furthermore, many tools are only available within commercial software packages. Sdfconf is a flexible, robust, and free-of-charge tool for linking data from various sources for meaningful and efficient manipulation and analysis of molecule data sets. Sdfconf packages molecular structures and metadata into a complete ensemble, from which one can access both the whole data set and individual molecules and/or conformations. In this software note, we offer some practical examples of the utilization of sdfconf. |
format | Online Article Text |
id | pubmed-8757437 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-87574372022-01-14 Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool Lätti, Sakari T. Niinivehmas, Sanna Pentikäinen, Olli T. J Chem Inf Model [Image: see text] Projects in chemo- and bioinformatics often consist of scattered data in various types and are difficult to access in a meaningful way for efficient data analysis. Data is usually too diverse to be even manipulated effectively. Sdfconf is data manipulation and analysis software to address this problem in a logical and robust manner. Other software commonly used for such tasks are either not designed with molecular and/or conformational data in mind or provide only a narrow set of tasks to be accomplished. Furthermore, many tools are only available within commercial software packages. Sdfconf is a flexible, robust, and free-of-charge tool for linking data from various sources for meaningful and efficient manipulation and analysis of molecule data sets. Sdfconf packages molecular structures and metadata into a complete ensemble, from which one can access both the whole data set and individual molecules and/or conformations. In this software note, we offer some practical examples of the utilization of sdfconf. American Chemical Society 2021-12-21 2022-01-10 /pmc/articles/PMC8757437/ /pubmed/34932340 http://dx.doi.org/10.1021/acs.jcim.1c01051 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Lätti, Sakari T. Niinivehmas, Sanna Pentikäinen, Olli T. Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool |
title | Sdfconf: A Novel, Flexible, and Robust Molecular Data
Management Tool |
title_full | Sdfconf: A Novel, Flexible, and Robust Molecular Data
Management Tool |
title_fullStr | Sdfconf: A Novel, Flexible, and Robust Molecular Data
Management Tool |
title_full_unstemmed | Sdfconf: A Novel, Flexible, and Robust Molecular Data
Management Tool |
title_short | Sdfconf: A Novel, Flexible, and Robust Molecular Data
Management Tool |
title_sort | sdfconf: a novel, flexible, and robust molecular data
management tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8757437/ https://www.ncbi.nlm.nih.gov/pubmed/34932340 http://dx.doi.org/10.1021/acs.jcim.1c01051 |
work_keys_str_mv | AT lattisakarit sdfconfanovelflexibleandrobustmoleculardatamanagementtool AT niinivehmassanna sdfconfanovelflexibleandrobustmoleculardatamanagementtool AT pentikainenollit sdfconfanovelflexibleandrobustmoleculardatamanagementtool |