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Computer-Assisted Analysis of Microplastics in Environmental Samples Based on μFTIR Imaging in Combination with Machine Learning
[Image: see text] The problem of automating the data analysis of microplastics following a spectroscopic measurement such as focal plane array (FPA)-based micro-Fourier transform infrared (FTIR), Raman, or QCL is gaining ever more attention. Ease of use of the analysis software, reduction of expert...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8757466/ https://www.ncbi.nlm.nih.gov/pubmed/35036459 http://dx.doi.org/10.1021/acs.estlett.1c00851 |
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author | Hufnagl, Benedikt Stibi, Michael Martirosyan, Heghnar Wilczek, Ursula Möller, Julia N. Löder, Martin G. J. Laforsch, Christian Lohninger, Hans |
author_facet | Hufnagl, Benedikt Stibi, Michael Martirosyan, Heghnar Wilczek, Ursula Möller, Julia N. Löder, Martin G. J. Laforsch, Christian Lohninger, Hans |
author_sort | Hufnagl, Benedikt |
collection | PubMed |
description | [Image: see text] The problem of automating the data analysis of microplastics following a spectroscopic measurement such as focal plane array (FPA)-based micro-Fourier transform infrared (FTIR), Raman, or QCL is gaining ever more attention. Ease of use of the analysis software, reduction of expert time, analysis speed, and accuracy of the result are key for making the overall process scalable and thus allowing nonresearch laboratories to offer microplastics analysis as a service. Over the recent years, the prevailing approach has been to use spectral library search to automatically identify spectra of the sample. Recent studies, however, showed that this approach is rather limited in certain contexts, which led to developments for making library searches more robust but on the other hand also paved the way for introducing more advanced machine learning approaches. This study describes a model-based machine learning approach based on random decision forests for the analysis of large FPA-μFTIR data sets of environmental samples. The model can distinguish between more than 20 different polymer types and is applicable to complex matrices. The performance of the model under these demanding circumstances is shown based on eight different data sets. Further, a Monte Carlo cross validation has been performed to compute error rates such as sensitivity, specificity, and precision. |
format | Online Article Text |
id | pubmed-8757466 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-87574662022-01-14 Computer-Assisted Analysis of Microplastics in Environmental Samples Based on μFTIR Imaging in Combination with Machine Learning Hufnagl, Benedikt Stibi, Michael Martirosyan, Heghnar Wilczek, Ursula Möller, Julia N. Löder, Martin G. J. Laforsch, Christian Lohninger, Hans Environ Sci Technol Lett [Image: see text] The problem of automating the data analysis of microplastics following a spectroscopic measurement such as focal plane array (FPA)-based micro-Fourier transform infrared (FTIR), Raman, or QCL is gaining ever more attention. Ease of use of the analysis software, reduction of expert time, analysis speed, and accuracy of the result are key for making the overall process scalable and thus allowing nonresearch laboratories to offer microplastics analysis as a service. Over the recent years, the prevailing approach has been to use spectral library search to automatically identify spectra of the sample. Recent studies, however, showed that this approach is rather limited in certain contexts, which led to developments for making library searches more robust but on the other hand also paved the way for introducing more advanced machine learning approaches. This study describes a model-based machine learning approach based on random decision forests for the analysis of large FPA-μFTIR data sets of environmental samples. The model can distinguish between more than 20 different polymer types and is applicable to complex matrices. The performance of the model under these demanding circumstances is shown based on eight different data sets. Further, a Monte Carlo cross validation has been performed to compute error rates such as sensitivity, specificity, and precision. American Chemical Society 2021-12-09 2022-01-11 /pmc/articles/PMC8757466/ /pubmed/35036459 http://dx.doi.org/10.1021/acs.estlett.1c00851 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Hufnagl, Benedikt Stibi, Michael Martirosyan, Heghnar Wilczek, Ursula Möller, Julia N. Löder, Martin G. J. Laforsch, Christian Lohninger, Hans Computer-Assisted Analysis of Microplastics in Environmental Samples Based on μFTIR Imaging in Combination with Machine Learning |
title | Computer-Assisted Analysis of Microplastics in Environmental
Samples Based on μFTIR Imaging in Combination with Machine Learning |
title_full | Computer-Assisted Analysis of Microplastics in Environmental
Samples Based on μFTIR Imaging in Combination with Machine Learning |
title_fullStr | Computer-Assisted Analysis of Microplastics in Environmental
Samples Based on μFTIR Imaging in Combination with Machine Learning |
title_full_unstemmed | Computer-Assisted Analysis of Microplastics in Environmental
Samples Based on μFTIR Imaging in Combination with Machine Learning |
title_short | Computer-Assisted Analysis of Microplastics in Environmental
Samples Based on μFTIR Imaging in Combination with Machine Learning |
title_sort | computer-assisted analysis of microplastics in environmental
samples based on μftir imaging in combination with machine learning |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8757466/ https://www.ncbi.nlm.nih.gov/pubmed/35036459 http://dx.doi.org/10.1021/acs.estlett.1c00851 |
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