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Contribution to a reference library of DNA barcodes of Colombian freshwater fishes

BACKGROUND: The Barcode of Life initiative was originally motivated by the large number of species, taxonomic difficulties and the limited number of expert taxonomists. Colombia has 1,610 freshwater fish species and comprises the second largest diversity of this group in the world. As genetic inform...

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Autores principales: Mejía-Estrada, Manuela, Jiménez-Segura, Luz Fernanda, Hernández-Zapata, Marcela, Soto Calderón, Iván D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8758633/
https://www.ncbi.nlm.nih.gov/pubmed/35068977
http://dx.doi.org/10.3897/BDJ.10.e65981
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author Mejía-Estrada, Manuela
Jiménez-Segura, Luz Fernanda
Hernández-Zapata, Marcela
Soto Calderón, Iván D
author_facet Mejía-Estrada, Manuela
Jiménez-Segura, Luz Fernanda
Hernández-Zapata, Marcela
Soto Calderón, Iván D
author_sort Mejía-Estrada, Manuela
collection PubMed
description BACKGROUND: The Barcode of Life initiative was originally motivated by the large number of species, taxonomic difficulties and the limited number of expert taxonomists. Colombia has 1,610 freshwater fish species and comprises the second largest diversity of this group in the world. As genetic information continues to be limited, we constructed a reference collection of DNA sequences of Colombian freshwater fishes deposited in the Ichthyology Collection of the University of Antioquia (CIUA), thus joining the multiple efforts that have been made in the country to contribute to the knowledge of genetic diversity in order to strengthen the inventories of biological collections and facilitate the solution of taxonomic issues in the future. NEW INFORMATION: This study contributes to the knowledge on the DNA barcodes and occurrence records of 96 species of Colombian freshwater fishes. Fifty-seven of the species represented in this dataset were already available in the Barcode Of Life Data System (BOLD System), while 39 correspond to new species to the BOLD System. Forty-nine specimens were collected in the Atrato River Basin and 708 in the Magdalena-Cauca asin during the period 2010-2020. Two species (Loricariichthysbrunneus (Hancock, 1828) and Poeciliasphenops Valenciennes, 1846) are considered exotic to the Atrato, Cauca and Magdalena Basins and four species (Oncorhynchusmykiss (Walbaum, 1792), Oreochromisniloticus (Linnaeus, 1758), Parachromisfriedrichsthalii (Heckel, 1840) and Xiphophorushelleri Heckel, 1848) are exotic to the Colombian hydrogeographic regions. All specimens are deposited in CIUA and have their DNA barcodes made publicly available in the BOLD online database. The geographical distribution dataset can be freely accessed through the Global Biodiversity Information Facility (GBIF).
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spelling pubmed-87586332022-01-21 Contribution to a reference library of DNA barcodes of Colombian freshwater fishes Mejía-Estrada, Manuela Jiménez-Segura, Luz Fernanda Hernández-Zapata, Marcela Soto Calderón, Iván D Biodivers Data J Data Paper (Biosciences) BACKGROUND: The Barcode of Life initiative was originally motivated by the large number of species, taxonomic difficulties and the limited number of expert taxonomists. Colombia has 1,610 freshwater fish species and comprises the second largest diversity of this group in the world. As genetic information continues to be limited, we constructed a reference collection of DNA sequences of Colombian freshwater fishes deposited in the Ichthyology Collection of the University of Antioquia (CIUA), thus joining the multiple efforts that have been made in the country to contribute to the knowledge of genetic diversity in order to strengthen the inventories of biological collections and facilitate the solution of taxonomic issues in the future. NEW INFORMATION: This study contributes to the knowledge on the DNA barcodes and occurrence records of 96 species of Colombian freshwater fishes. Fifty-seven of the species represented in this dataset were already available in the Barcode Of Life Data System (BOLD System), while 39 correspond to new species to the BOLD System. Forty-nine specimens were collected in the Atrato River Basin and 708 in the Magdalena-Cauca asin during the period 2010-2020. Two species (Loricariichthysbrunneus (Hancock, 1828) and Poeciliasphenops Valenciennes, 1846) are considered exotic to the Atrato, Cauca and Magdalena Basins and four species (Oncorhynchusmykiss (Walbaum, 1792), Oreochromisniloticus (Linnaeus, 1758), Parachromisfriedrichsthalii (Heckel, 1840) and Xiphophorushelleri Heckel, 1848) are exotic to the Colombian hydrogeographic regions. All specimens are deposited in CIUA and have their DNA barcodes made publicly available in the BOLD online database. The geographical distribution dataset can be freely accessed through the Global Biodiversity Information Facility (GBIF). Pensoft Publishers 2022-01-06 /pmc/articles/PMC8758633/ /pubmed/35068977 http://dx.doi.org/10.3897/BDJ.10.e65981 Text en Manuela Mejía-Estrada, Luz Fernanda Jiménez-Segura, Marcela Hernández-Zapata, Iván D Soto Calderón https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Data Paper (Biosciences)
Mejía-Estrada, Manuela
Jiménez-Segura, Luz Fernanda
Hernández-Zapata, Marcela
Soto Calderón, Iván D
Contribution to a reference library of DNA barcodes of Colombian freshwater fishes
title Contribution to a reference library of DNA barcodes of Colombian freshwater fishes
title_full Contribution to a reference library of DNA barcodes of Colombian freshwater fishes
title_fullStr Contribution to a reference library of DNA barcodes of Colombian freshwater fishes
title_full_unstemmed Contribution to a reference library of DNA barcodes of Colombian freshwater fishes
title_short Contribution to a reference library of DNA barcodes of Colombian freshwater fishes
title_sort contribution to a reference library of dna barcodes of colombian freshwater fishes
topic Data Paper (Biosciences)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8758633/
https://www.ncbi.nlm.nih.gov/pubmed/35068977
http://dx.doi.org/10.3897/BDJ.10.e65981
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