MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters

Magnetosome gene clusters (MGCs), which are responsible for magnetosome biosynthesis and organization in magnetotactic bacteria (MTB), are the key to deciphering the mechanisms and evolutionary origin of magnetoreception, organelle biogenesis, and intracellular biomineralization in bacteria. Here, w...

Descripción completa

Detalles Bibliográficos
Autores principales: Ji, Runjia, Zhang, Wensi, Pan, Yongxin, Lin, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2022
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8759365/
https://www.ncbi.nlm.nih.gov/pubmed/35023778
http://dx.doi.org/10.1128/mra.01031-21
_version_ 1784633091811180544
author Ji, Runjia
Zhang, Wensi
Pan, Yongxin
Lin, Wei
author_facet Ji, Runjia
Zhang, Wensi
Pan, Yongxin
Lin, Wei
author_sort Ji, Runjia
collection PubMed
description Magnetosome gene clusters (MGCs), which are responsible for magnetosome biosynthesis and organization in magnetotactic bacteria (MTB), are the key to deciphering the mechanisms and evolutionary origin of magnetoreception, organelle biogenesis, and intracellular biomineralization in bacteria. Here, we report the development of MagCluster, a Python stand-alone tool for efficient exploration of MGCs from large-scale (meta)genomic data.
format Online
Article
Text
id pubmed-8759365
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-87593652022-01-24 MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters Ji, Runjia Zhang, Wensi Pan, Yongxin Lin, Wei Microbiol Resour Announc Databases and Software Magnetosome gene clusters (MGCs), which are responsible for magnetosome biosynthesis and organization in magnetotactic bacteria (MTB), are the key to deciphering the mechanisms and evolutionary origin of magnetoreception, organelle biogenesis, and intracellular biomineralization in bacteria. Here, we report the development of MagCluster, a Python stand-alone tool for efficient exploration of MGCs from large-scale (meta)genomic data. American Society for Microbiology 2022-01-13 /pmc/articles/PMC8759365/ /pubmed/35023778 http://dx.doi.org/10.1128/mra.01031-21 Text en Copyright © 2022 Ji et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
Ji, Runjia
Zhang, Wensi
Pan, Yongxin
Lin, Wei
MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters
title MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters
title_full MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters
title_fullStr MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters
title_full_unstemmed MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters
title_short MagCluster: a Tool for Identification, Annotation, and Visualization of Magnetosome Gene Clusters
title_sort magcluster: a tool for identification, annotation, and visualization of magnetosome gene clusters
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8759365/
https://www.ncbi.nlm.nih.gov/pubmed/35023778
http://dx.doi.org/10.1128/mra.01031-21
work_keys_str_mv AT jirunjia magclusteratoolforidentificationannotationandvisualizationofmagnetosomegeneclusters
AT zhangwensi magclusteratoolforidentificationannotationandvisualizationofmagnetosomegeneclusters
AT panyongxin magclusteratoolforidentificationannotationandvisualizationofmagnetosomegeneclusters
AT linwei magclusteratoolforidentificationannotationandvisualizationofmagnetosomegeneclusters

Ejemplares similares