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A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms
In this study, we examined the total bacterial community associated with ureolytic biomineralization from urine drainage systems. Biomineral samples were obtained from 11 California Department of Transportation public restrooms fitted with waterless, low-flow, or conventional urinals in 2019. Follow...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8759634/ https://www.ncbi.nlm.nih.gov/pubmed/35030221 http://dx.doi.org/10.1371/journal.pone.0262425 |
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author | Lim, Kahui Rolston, Matthew Barnum, Samantha Wademan, Cara Leverenz, Harold |
author_facet | Lim, Kahui Rolston, Matthew Barnum, Samantha Wademan, Cara Leverenz, Harold |
author_sort | Lim, Kahui |
collection | PubMed |
description | In this study, we examined the total bacterial community associated with ureolytic biomineralization from urine drainage systems. Biomineral samples were obtained from 11 California Department of Transportation public restrooms fitted with waterless, low-flow, or conventional urinals in 2019. Following high throughput 16S rRNA Illumina sequences processed using the DADA2 pipeline, the microbial diversity assessment of 169 biomineral and urine samples resulted in 3,869 reference sequences aggregated as 598 operational taxonomic units (OTUs). Using PERMANOVA testing, we found strong, significant differences between biomineral samples grouped by intrasystem sampling location and urinal type. Biomineral microbial community profiles and alpha diversities differed significantly when controlling for sampling season. Observational statistics revealed that biomineral samples obtained from waterless urinals contained the largest ureC/16S gene copy ratios and were the least diverse urinal type in terms of Shannon indices. Waterless urinal biomineral samples were largely dominated by the Bacilli class (86.1%) compared to low-flow (41.3%) and conventional samples (20.5%), and had the fewest genera that account for less than 2.5% relative abundance per OTU. Our findings are useful for future microbial ecology studies of urine source-separation technologies, as we have established a comparative basis using a large sample size and study area. |
format | Online Article Text |
id | pubmed-8759634 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-87596342022-01-15 A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms Lim, Kahui Rolston, Matthew Barnum, Samantha Wademan, Cara Leverenz, Harold PLoS One Research Article In this study, we examined the total bacterial community associated with ureolytic biomineralization from urine drainage systems. Biomineral samples were obtained from 11 California Department of Transportation public restrooms fitted with waterless, low-flow, or conventional urinals in 2019. Following high throughput 16S rRNA Illumina sequences processed using the DADA2 pipeline, the microbial diversity assessment of 169 biomineral and urine samples resulted in 3,869 reference sequences aggregated as 598 operational taxonomic units (OTUs). Using PERMANOVA testing, we found strong, significant differences between biomineral samples grouped by intrasystem sampling location and urinal type. Biomineral microbial community profiles and alpha diversities differed significantly when controlling for sampling season. Observational statistics revealed that biomineral samples obtained from waterless urinals contained the largest ureC/16S gene copy ratios and were the least diverse urinal type in terms of Shannon indices. Waterless urinal biomineral samples were largely dominated by the Bacilli class (86.1%) compared to low-flow (41.3%) and conventional samples (20.5%), and had the fewest genera that account for less than 2.5% relative abundance per OTU. Our findings are useful for future microbial ecology studies of urine source-separation technologies, as we have established a comparative basis using a large sample size and study area. Public Library of Science 2022-01-14 /pmc/articles/PMC8759634/ /pubmed/35030221 http://dx.doi.org/10.1371/journal.pone.0262425 Text en © 2022 Lim et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lim, Kahui Rolston, Matthew Barnum, Samantha Wademan, Cara Leverenz, Harold A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms |
title | A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms |
title_full | A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms |
title_fullStr | A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms |
title_full_unstemmed | A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms |
title_short | A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms |
title_sort | biogeographic 16s rrna survey of bacterial communities of ureolytic biomineralization from california public restrooms |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8759634/ https://www.ncbi.nlm.nih.gov/pubmed/35030221 http://dx.doi.org/10.1371/journal.pone.0262425 |
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