Cargando…
Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images
Chest X-ray images are used in deep convolutional neural networks for the detection of COVID-19, the greatest human challenge of the 21st century. Robustness to noise and improvement of generalization are the major challenges in designing these networks. In this paper, we introduce a strategy for da...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Ltd.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8760424/ https://www.ncbi.nlm.nih.gov/pubmed/34352454 http://dx.doi.org/10.1016/j.compbiomed.2021.104704 |
_version_ | 1784633316860755968 |
---|---|
author | Momeny, Mohammad Neshat, Ali Asghar Hussain, Mohammad Arafat Kia, Solmaz Marhamati, Mahmoud Jahanbakhshi, Ahmad Hamarneh, Ghassan |
author_facet | Momeny, Mohammad Neshat, Ali Asghar Hussain, Mohammad Arafat Kia, Solmaz Marhamati, Mahmoud Jahanbakhshi, Ahmad Hamarneh, Ghassan |
author_sort | Momeny, Mohammad |
collection | PubMed |
description | Chest X-ray images are used in deep convolutional neural networks for the detection of COVID-19, the greatest human challenge of the 21st century. Robustness to noise and improvement of generalization are the major challenges in designing these networks. In this paper, we introduce a strategy for data augmentation using the determination of the type and value of noise density to improve the robustness and generalization of deep CNNs for COVID-19 detection. Firstly, we present a learning-to-augment approach that generates new noisy variants of the original image data with optimized noise density. We apply a Bayesian optimization technique to control and choose the optimal noise type and its parameters. Secondly, we propose a novel data augmentation strategy, based on denoised X-ray images, that uses the distance between denoised and original pixels to generate new data. We develop an autoencoder model to create new data using denoised images corrupted by the Gaussian and impulse noise. A database of chest X-ray images, containing COVID-19 positive, healthy, and non-COVID pneumonia cases, is used to fine-tune the pre-trained networks (AlexNet, ShuffleNet, ResNet18, and GoogleNet). The proposed method performs better results compared to the state-of-the-art learning to augment strategies in terms of sensitivity (0.808), specificity (0.915), and F-Measure (0.737). The source code of the proposed method is available at https://github.com/mohamadmomeny/Learning-to-augment-strategy. |
format | Online Article Text |
id | pubmed-8760424 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87604242022-01-18 Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images Momeny, Mohammad Neshat, Ali Asghar Hussain, Mohammad Arafat Kia, Solmaz Marhamati, Mahmoud Jahanbakhshi, Ahmad Hamarneh, Ghassan Comput Biol Med Article Chest X-ray images are used in deep convolutional neural networks for the detection of COVID-19, the greatest human challenge of the 21st century. Robustness to noise and improvement of generalization are the major challenges in designing these networks. In this paper, we introduce a strategy for data augmentation using the determination of the type and value of noise density to improve the robustness and generalization of deep CNNs for COVID-19 detection. Firstly, we present a learning-to-augment approach that generates new noisy variants of the original image data with optimized noise density. We apply a Bayesian optimization technique to control and choose the optimal noise type and its parameters. Secondly, we propose a novel data augmentation strategy, based on denoised X-ray images, that uses the distance between denoised and original pixels to generate new data. We develop an autoencoder model to create new data using denoised images corrupted by the Gaussian and impulse noise. A database of chest X-ray images, containing COVID-19 positive, healthy, and non-COVID pneumonia cases, is used to fine-tune the pre-trained networks (AlexNet, ShuffleNet, ResNet18, and GoogleNet). The proposed method performs better results compared to the state-of-the-art learning to augment strategies in terms of sensitivity (0.808), specificity (0.915), and F-Measure (0.737). The source code of the proposed method is available at https://github.com/mohamadmomeny/Learning-to-augment-strategy. Elsevier Ltd. 2021-09 2021-07-29 /pmc/articles/PMC8760424/ /pubmed/34352454 http://dx.doi.org/10.1016/j.compbiomed.2021.104704 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Momeny, Mohammad Neshat, Ali Asghar Hussain, Mohammad Arafat Kia, Solmaz Marhamati, Mahmoud Jahanbakhshi, Ahmad Hamarneh, Ghassan Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images |
title | Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images |
title_full | Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images |
title_fullStr | Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images |
title_full_unstemmed | Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images |
title_short | Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images |
title_sort | learning-to-augment strategy using noisy and denoised data: improving generalizability of deep cnn for the detection of covid-19 in x-ray images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8760424/ https://www.ncbi.nlm.nih.gov/pubmed/34352454 http://dx.doi.org/10.1016/j.compbiomed.2021.104704 |
work_keys_str_mv | AT momenymohammad learningtoaugmentstrategyusingnoisyanddenoiseddataimprovinggeneralizabilityofdeepcnnforthedetectionofcovid19inxrayimages AT neshataliasghar learningtoaugmentstrategyusingnoisyanddenoiseddataimprovinggeneralizabilityofdeepcnnforthedetectionofcovid19inxrayimages AT hussainmohammadarafat learningtoaugmentstrategyusingnoisyanddenoiseddataimprovinggeneralizabilityofdeepcnnforthedetectionofcovid19inxrayimages AT kiasolmaz learningtoaugmentstrategyusingnoisyanddenoiseddataimprovinggeneralizabilityofdeepcnnforthedetectionofcovid19inxrayimages AT marhamatimahmoud learningtoaugmentstrategyusingnoisyanddenoiseddataimprovinggeneralizabilityofdeepcnnforthedetectionofcovid19inxrayimages AT jahanbakhshiahmad learningtoaugmentstrategyusingnoisyanddenoiseddataimprovinggeneralizabilityofdeepcnnforthedetectionofcovid19inxrayimages AT hamarnehghassan learningtoaugmentstrategyusingnoisyanddenoiseddataimprovinggeneralizabilityofdeepcnnforthedetectionofcovid19inxrayimages |