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Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts

For many decades, the clinical unmet needs of primary Sjögren’s Syndrome (pSS) have been left unresolved due to the rareness of the disease and the complexity of the underlying pathogenic mechanisms, including the pSS-associated lymphomagenesis process. Here, we present the HarmonicSS cloud-computin...

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Autores principales: Pezoulas, Vasileios C., Goules, Andreas, Kalatzis, Fanis, Chatzis, Luke, Kourou, Konstantina D., Venetsanopoulou, Aliki, Exarchos, Themis P., Gandolfo, Saviana, Votis, Konstantinos, Zampeli, Evi, Burmeister, Jan, May, Thorsten, Marcelino Pérez, Manuel, Lishchuk, Iryna, Chondrogiannis, Thymios, Andronikou, Vassiliki, Varvarigou, Theodora, Filipovic, Nenad, Tsiknakis, Manolis, Baldini, Chiara, Bombardieri, Michele, Bootsma, Hendrika, Bowman, Simon J., Soyfoo, Muhammad Shahnawaz, Parisis, Dorian, Delporte, Christine, Devauchelle-Pensec, Valérie, Pers, Jacques-Olivier, Dörner, Thomas, Bartoloni, Elena, Gerli, Roberto, Giacomelli, Roberto, Jonsson, Roland, Ng, Wan-Fai, Priori, Roberta, Ramos-Casals, Manuel, Sivils, Kathy, Skopouli, Fotini, Torsten, Witte, A. G. van Roon, Joel, Xavier, Mariette, De Vita, Salvatore, Tzioufas, Athanasios G., Fotiadis, Dimitrios I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8760551/
https://www.ncbi.nlm.nih.gov/pubmed/35070169
http://dx.doi.org/10.1016/j.csbj.2022.01.002
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author Pezoulas, Vasileios C.
Goules, Andreas
Kalatzis, Fanis
Chatzis, Luke
Kourou, Konstantina D.
Venetsanopoulou, Aliki
Exarchos, Themis P.
Gandolfo, Saviana
Votis, Konstantinos
Zampeli, Evi
Burmeister, Jan
May, Thorsten
Marcelino Pérez, Manuel
Lishchuk, Iryna
Chondrogiannis, Thymios
Andronikou, Vassiliki
Varvarigou, Theodora
Filipovic, Nenad
Tsiknakis, Manolis
Baldini, Chiara
Bombardieri, Michele
Bootsma, Hendrika
Bowman, Simon J.
Soyfoo, Muhammad Shahnawaz
Parisis, Dorian
Delporte, Christine
Devauchelle-Pensec, Valérie
Pers, Jacques-Olivier
Dörner, Thomas
Bartoloni, Elena
Gerli, Roberto
Giacomelli, Roberto
Jonsson, Roland
Ng, Wan-Fai
Priori, Roberta
Ramos-Casals, Manuel
Sivils, Kathy
Skopouli, Fotini
Torsten, Witte
A. G. van Roon, Joel
Xavier, Mariette
De Vita, Salvatore
Tzioufas, Athanasios G.
Fotiadis, Dimitrios I.
author_facet Pezoulas, Vasileios C.
Goules, Andreas
Kalatzis, Fanis
Chatzis, Luke
Kourou, Konstantina D.
Venetsanopoulou, Aliki
Exarchos, Themis P.
Gandolfo, Saviana
Votis, Konstantinos
Zampeli, Evi
Burmeister, Jan
May, Thorsten
Marcelino Pérez, Manuel
Lishchuk, Iryna
Chondrogiannis, Thymios
Andronikou, Vassiliki
Varvarigou, Theodora
Filipovic, Nenad
Tsiknakis, Manolis
Baldini, Chiara
Bombardieri, Michele
Bootsma, Hendrika
Bowman, Simon J.
Soyfoo, Muhammad Shahnawaz
Parisis, Dorian
Delporte, Christine
Devauchelle-Pensec, Valérie
Pers, Jacques-Olivier
Dörner, Thomas
Bartoloni, Elena
Gerli, Roberto
Giacomelli, Roberto
Jonsson, Roland
Ng, Wan-Fai
Priori, Roberta
Ramos-Casals, Manuel
Sivils, Kathy
Skopouli, Fotini
Torsten, Witte
A. G. van Roon, Joel
Xavier, Mariette
De Vita, Salvatore
Tzioufas, Athanasios G.
Fotiadis, Dimitrios I.
author_sort Pezoulas, Vasileios C.
collection PubMed
description For many decades, the clinical unmet needs of primary Sjögren’s Syndrome (pSS) have been left unresolved due to the rareness of the disease and the complexity of the underlying pathogenic mechanisms, including the pSS-associated lymphomagenesis process. Here, we present the HarmonicSS cloud-computing exemplar which offers beyond the state-of-the-art data analytics services to address the pSS clinical unmet needs, including the development of lymphoma classification models and the identification of biomarkers for lymphomagenesis. The users of the platform have been able to successfully interlink, curate, and harmonize 21 regional, national, and international European cohorts of 7,551 pSS patients with respect to the ethical and legal issues for data sharing. Federated AI algorithms were trained across the harmonized databases, with reduced execution time complexity, yielding robust lymphoma classification models with 85% accuracy, 81.25% sensitivity, 85.4% specificity along with 5 biomarkers for lymphoma development. To our knowledge, this is the first GDPR compliant platform that provides federated AI services to address the pSS clinical unmet needs.
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spelling pubmed-87605512022-01-21 Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts Pezoulas, Vasileios C. Goules, Andreas Kalatzis, Fanis Chatzis, Luke Kourou, Konstantina D. Venetsanopoulou, Aliki Exarchos, Themis P. Gandolfo, Saviana Votis, Konstantinos Zampeli, Evi Burmeister, Jan May, Thorsten Marcelino Pérez, Manuel Lishchuk, Iryna Chondrogiannis, Thymios Andronikou, Vassiliki Varvarigou, Theodora Filipovic, Nenad Tsiknakis, Manolis Baldini, Chiara Bombardieri, Michele Bootsma, Hendrika Bowman, Simon J. Soyfoo, Muhammad Shahnawaz Parisis, Dorian Delporte, Christine Devauchelle-Pensec, Valérie Pers, Jacques-Olivier Dörner, Thomas Bartoloni, Elena Gerli, Roberto Giacomelli, Roberto Jonsson, Roland Ng, Wan-Fai Priori, Roberta Ramos-Casals, Manuel Sivils, Kathy Skopouli, Fotini Torsten, Witte A. G. van Roon, Joel Xavier, Mariette De Vita, Salvatore Tzioufas, Athanasios G. Fotiadis, Dimitrios I. Comput Struct Biotechnol J Research Article For many decades, the clinical unmet needs of primary Sjögren’s Syndrome (pSS) have been left unresolved due to the rareness of the disease and the complexity of the underlying pathogenic mechanisms, including the pSS-associated lymphomagenesis process. Here, we present the HarmonicSS cloud-computing exemplar which offers beyond the state-of-the-art data analytics services to address the pSS clinical unmet needs, including the development of lymphoma classification models and the identification of biomarkers for lymphomagenesis. The users of the platform have been able to successfully interlink, curate, and harmonize 21 regional, national, and international European cohorts of 7,551 pSS patients with respect to the ethical and legal issues for data sharing. Federated AI algorithms were trained across the harmonized databases, with reduced execution time complexity, yielding robust lymphoma classification models with 85% accuracy, 81.25% sensitivity, 85.4% specificity along with 5 biomarkers for lymphoma development. To our knowledge, this is the first GDPR compliant platform that provides federated AI services to address the pSS clinical unmet needs. Research Network of Computational and Structural Biotechnology 2022-01-07 /pmc/articles/PMC8760551/ /pubmed/35070169 http://dx.doi.org/10.1016/j.csbj.2022.01.002 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Pezoulas, Vasileios C.
Goules, Andreas
Kalatzis, Fanis
Chatzis, Luke
Kourou, Konstantina D.
Venetsanopoulou, Aliki
Exarchos, Themis P.
Gandolfo, Saviana
Votis, Konstantinos
Zampeli, Evi
Burmeister, Jan
May, Thorsten
Marcelino Pérez, Manuel
Lishchuk, Iryna
Chondrogiannis, Thymios
Andronikou, Vassiliki
Varvarigou, Theodora
Filipovic, Nenad
Tsiknakis, Manolis
Baldini, Chiara
Bombardieri, Michele
Bootsma, Hendrika
Bowman, Simon J.
Soyfoo, Muhammad Shahnawaz
Parisis, Dorian
Delporte, Christine
Devauchelle-Pensec, Valérie
Pers, Jacques-Olivier
Dörner, Thomas
Bartoloni, Elena
Gerli, Roberto
Giacomelli, Roberto
Jonsson, Roland
Ng, Wan-Fai
Priori, Roberta
Ramos-Casals, Manuel
Sivils, Kathy
Skopouli, Fotini
Torsten, Witte
A. G. van Roon, Joel
Xavier, Mariette
De Vita, Salvatore
Tzioufas, Athanasios G.
Fotiadis, Dimitrios I.
Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts
title Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts
title_full Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts
title_fullStr Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts
title_full_unstemmed Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts
title_short Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts
title_sort addressing the clinical unmet needs in primary sjögren’s syndrome through the sharing, harmonization and federated analysis of 21 european cohorts
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8760551/
https://www.ncbi.nlm.nih.gov/pubmed/35070169
http://dx.doi.org/10.1016/j.csbj.2022.01.002
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