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Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts
For many decades, the clinical unmet needs of primary Sjögren’s Syndrome (pSS) have been left unresolved due to the rareness of the disease and the complexity of the underlying pathogenic mechanisms, including the pSS-associated lymphomagenesis process. Here, we present the HarmonicSS cloud-computin...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8760551/ https://www.ncbi.nlm.nih.gov/pubmed/35070169 http://dx.doi.org/10.1016/j.csbj.2022.01.002 |
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author | Pezoulas, Vasileios C. Goules, Andreas Kalatzis, Fanis Chatzis, Luke Kourou, Konstantina D. Venetsanopoulou, Aliki Exarchos, Themis P. Gandolfo, Saviana Votis, Konstantinos Zampeli, Evi Burmeister, Jan May, Thorsten Marcelino Pérez, Manuel Lishchuk, Iryna Chondrogiannis, Thymios Andronikou, Vassiliki Varvarigou, Theodora Filipovic, Nenad Tsiknakis, Manolis Baldini, Chiara Bombardieri, Michele Bootsma, Hendrika Bowman, Simon J. Soyfoo, Muhammad Shahnawaz Parisis, Dorian Delporte, Christine Devauchelle-Pensec, Valérie Pers, Jacques-Olivier Dörner, Thomas Bartoloni, Elena Gerli, Roberto Giacomelli, Roberto Jonsson, Roland Ng, Wan-Fai Priori, Roberta Ramos-Casals, Manuel Sivils, Kathy Skopouli, Fotini Torsten, Witte A. G. van Roon, Joel Xavier, Mariette De Vita, Salvatore Tzioufas, Athanasios G. Fotiadis, Dimitrios I. |
author_facet | Pezoulas, Vasileios C. Goules, Andreas Kalatzis, Fanis Chatzis, Luke Kourou, Konstantina D. Venetsanopoulou, Aliki Exarchos, Themis P. Gandolfo, Saviana Votis, Konstantinos Zampeli, Evi Burmeister, Jan May, Thorsten Marcelino Pérez, Manuel Lishchuk, Iryna Chondrogiannis, Thymios Andronikou, Vassiliki Varvarigou, Theodora Filipovic, Nenad Tsiknakis, Manolis Baldini, Chiara Bombardieri, Michele Bootsma, Hendrika Bowman, Simon J. Soyfoo, Muhammad Shahnawaz Parisis, Dorian Delporte, Christine Devauchelle-Pensec, Valérie Pers, Jacques-Olivier Dörner, Thomas Bartoloni, Elena Gerli, Roberto Giacomelli, Roberto Jonsson, Roland Ng, Wan-Fai Priori, Roberta Ramos-Casals, Manuel Sivils, Kathy Skopouli, Fotini Torsten, Witte A. G. van Roon, Joel Xavier, Mariette De Vita, Salvatore Tzioufas, Athanasios G. Fotiadis, Dimitrios I. |
author_sort | Pezoulas, Vasileios C. |
collection | PubMed |
description | For many decades, the clinical unmet needs of primary Sjögren’s Syndrome (pSS) have been left unresolved due to the rareness of the disease and the complexity of the underlying pathogenic mechanisms, including the pSS-associated lymphomagenesis process. Here, we present the HarmonicSS cloud-computing exemplar which offers beyond the state-of-the-art data analytics services to address the pSS clinical unmet needs, including the development of lymphoma classification models and the identification of biomarkers for lymphomagenesis. The users of the platform have been able to successfully interlink, curate, and harmonize 21 regional, national, and international European cohorts of 7,551 pSS patients with respect to the ethical and legal issues for data sharing. Federated AI algorithms were trained across the harmonized databases, with reduced execution time complexity, yielding robust lymphoma classification models with 85% accuracy, 81.25% sensitivity, 85.4% specificity along with 5 biomarkers for lymphoma development. To our knowledge, this is the first GDPR compliant platform that provides federated AI services to address the pSS clinical unmet needs. |
format | Online Article Text |
id | pubmed-8760551 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-87605512022-01-21 Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts Pezoulas, Vasileios C. Goules, Andreas Kalatzis, Fanis Chatzis, Luke Kourou, Konstantina D. Venetsanopoulou, Aliki Exarchos, Themis P. Gandolfo, Saviana Votis, Konstantinos Zampeli, Evi Burmeister, Jan May, Thorsten Marcelino Pérez, Manuel Lishchuk, Iryna Chondrogiannis, Thymios Andronikou, Vassiliki Varvarigou, Theodora Filipovic, Nenad Tsiknakis, Manolis Baldini, Chiara Bombardieri, Michele Bootsma, Hendrika Bowman, Simon J. Soyfoo, Muhammad Shahnawaz Parisis, Dorian Delporte, Christine Devauchelle-Pensec, Valérie Pers, Jacques-Olivier Dörner, Thomas Bartoloni, Elena Gerli, Roberto Giacomelli, Roberto Jonsson, Roland Ng, Wan-Fai Priori, Roberta Ramos-Casals, Manuel Sivils, Kathy Skopouli, Fotini Torsten, Witte A. G. van Roon, Joel Xavier, Mariette De Vita, Salvatore Tzioufas, Athanasios G. Fotiadis, Dimitrios I. Comput Struct Biotechnol J Research Article For many decades, the clinical unmet needs of primary Sjögren’s Syndrome (pSS) have been left unresolved due to the rareness of the disease and the complexity of the underlying pathogenic mechanisms, including the pSS-associated lymphomagenesis process. Here, we present the HarmonicSS cloud-computing exemplar which offers beyond the state-of-the-art data analytics services to address the pSS clinical unmet needs, including the development of lymphoma classification models and the identification of biomarkers for lymphomagenesis. The users of the platform have been able to successfully interlink, curate, and harmonize 21 regional, national, and international European cohorts of 7,551 pSS patients with respect to the ethical and legal issues for data sharing. Federated AI algorithms were trained across the harmonized databases, with reduced execution time complexity, yielding robust lymphoma classification models with 85% accuracy, 81.25% sensitivity, 85.4% specificity along with 5 biomarkers for lymphoma development. To our knowledge, this is the first GDPR compliant platform that provides federated AI services to address the pSS clinical unmet needs. Research Network of Computational and Structural Biotechnology 2022-01-07 /pmc/articles/PMC8760551/ /pubmed/35070169 http://dx.doi.org/10.1016/j.csbj.2022.01.002 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Research Article Pezoulas, Vasileios C. Goules, Andreas Kalatzis, Fanis Chatzis, Luke Kourou, Konstantina D. Venetsanopoulou, Aliki Exarchos, Themis P. Gandolfo, Saviana Votis, Konstantinos Zampeli, Evi Burmeister, Jan May, Thorsten Marcelino Pérez, Manuel Lishchuk, Iryna Chondrogiannis, Thymios Andronikou, Vassiliki Varvarigou, Theodora Filipovic, Nenad Tsiknakis, Manolis Baldini, Chiara Bombardieri, Michele Bootsma, Hendrika Bowman, Simon J. Soyfoo, Muhammad Shahnawaz Parisis, Dorian Delporte, Christine Devauchelle-Pensec, Valérie Pers, Jacques-Olivier Dörner, Thomas Bartoloni, Elena Gerli, Roberto Giacomelli, Roberto Jonsson, Roland Ng, Wan-Fai Priori, Roberta Ramos-Casals, Manuel Sivils, Kathy Skopouli, Fotini Torsten, Witte A. G. van Roon, Joel Xavier, Mariette De Vita, Salvatore Tzioufas, Athanasios G. Fotiadis, Dimitrios I. Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts |
title | Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts |
title_full | Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts |
title_fullStr | Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts |
title_full_unstemmed | Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts |
title_short | Addressing the clinical unmet needs in primary Sjögren’s Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts |
title_sort | addressing the clinical unmet needs in primary sjögren’s syndrome through the sharing, harmonization and federated analysis of 21 european cohorts |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8760551/ https://www.ncbi.nlm.nih.gov/pubmed/35070169 http://dx.doi.org/10.1016/j.csbj.2022.01.002 |
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