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MEDAS: an open-source platform as a service to help break the walls between medicine and informatics

In the past decade, deep learning (DL) has achieved unprecedented success in numerous fields, such as computer vision and healthcare. Particularly, DL is experiencing an increasing development in advanced medical image analysis applications in terms of segmentation, classification, detection, and ot...

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Autores principales: Zhang, Liang, Li, Johann, Li, Ping, Lu, Xiaoyuan, Gong, Maoguo, Shen, Peiyi, Zhu, Guangming, Shah, Syed Afaq, Bennamoun, Mohammed, Qian, Kun, Schuller, Björn W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer London 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8761112/
https://www.ncbi.nlm.nih.gov/pubmed/35068703
http://dx.doi.org/10.1007/s00521-021-06750-9
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author Zhang, Liang
Li, Johann
Li, Ping
Lu, Xiaoyuan
Gong, Maoguo
Shen, Peiyi
Zhu, Guangming
Shah, Syed Afaq
Bennamoun, Mohammed
Qian, Kun
Schuller, Björn W.
author_facet Zhang, Liang
Li, Johann
Li, Ping
Lu, Xiaoyuan
Gong, Maoguo
Shen, Peiyi
Zhu, Guangming
Shah, Syed Afaq
Bennamoun, Mohammed
Qian, Kun
Schuller, Björn W.
author_sort Zhang, Liang
collection PubMed
description In the past decade, deep learning (DL) has achieved unprecedented success in numerous fields, such as computer vision and healthcare. Particularly, DL is experiencing an increasing development in advanced medical image analysis applications in terms of segmentation, classification, detection, and other tasks. On the one hand, tremendous needs that leverage DL’s power for medical image analysis arise from the research community of a medical, clinical, and informatics background to share their knowledge, skills, and experience jointly. On the other hand, barriers between disciplines are on the road for them, often hampering a full and efficient collaboration. To this end, we propose our novel open-source platform, i.e., MEDAS–the MEDical open-source platform As Service. To the best of our knowledge, MEDAS is the first open-source platform providing collaborative and interactive services for researchers from a medical background using DL-related toolkits easily and for scientists or engineers from informatics modeling faster. Based on tools and utilities from the idea of RINV (Rapid Implementation aNd Verification), our proposed platform implements tools in pre-processing, post-processing, augmentation, visualization, and other phases needed in medical image analysis. Five tasks, concerning lung, liver, brain, chest, and pathology, are validated and demonstrated to be efficiently realizable by using MEDAS. MEDAS is available at http://medas.bnc.org.cn/.
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spelling pubmed-87611122022-01-18 MEDAS: an open-source platform as a service to help break the walls between medicine and informatics Zhang, Liang Li, Johann Li, Ping Lu, Xiaoyuan Gong, Maoguo Shen, Peiyi Zhu, Guangming Shah, Syed Afaq Bennamoun, Mohammed Qian, Kun Schuller, Björn W. Neural Comput Appl Original Article In the past decade, deep learning (DL) has achieved unprecedented success in numerous fields, such as computer vision and healthcare. Particularly, DL is experiencing an increasing development in advanced medical image analysis applications in terms of segmentation, classification, detection, and other tasks. On the one hand, tremendous needs that leverage DL’s power for medical image analysis arise from the research community of a medical, clinical, and informatics background to share their knowledge, skills, and experience jointly. On the other hand, barriers between disciplines are on the road for them, often hampering a full and efficient collaboration. To this end, we propose our novel open-source platform, i.e., MEDAS–the MEDical open-source platform As Service. To the best of our knowledge, MEDAS is the first open-source platform providing collaborative and interactive services for researchers from a medical background using DL-related toolkits easily and for scientists or engineers from informatics modeling faster. Based on tools and utilities from the idea of RINV (Rapid Implementation aNd Verification), our proposed platform implements tools in pre-processing, post-processing, augmentation, visualization, and other phases needed in medical image analysis. Five tasks, concerning lung, liver, brain, chest, and pathology, are validated and demonstrated to be efficiently realizable by using MEDAS. MEDAS is available at http://medas.bnc.org.cn/. Springer London 2022-01-16 2022 /pmc/articles/PMC8761112/ /pubmed/35068703 http://dx.doi.org/10.1007/s00521-021-06750-9 Text en © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Zhang, Liang
Li, Johann
Li, Ping
Lu, Xiaoyuan
Gong, Maoguo
Shen, Peiyi
Zhu, Guangming
Shah, Syed Afaq
Bennamoun, Mohammed
Qian, Kun
Schuller, Björn W.
MEDAS: an open-source platform as a service to help break the walls between medicine and informatics
title MEDAS: an open-source platform as a service to help break the walls between medicine and informatics
title_full MEDAS: an open-source platform as a service to help break the walls between medicine and informatics
title_fullStr MEDAS: an open-source platform as a service to help break the walls between medicine and informatics
title_full_unstemmed MEDAS: an open-source platform as a service to help break the walls between medicine and informatics
title_short MEDAS: an open-source platform as a service to help break the walls between medicine and informatics
title_sort medas: an open-source platform as a service to help break the walls between medicine and informatics
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8761112/
https://www.ncbi.nlm.nih.gov/pubmed/35068703
http://dx.doi.org/10.1007/s00521-021-06750-9
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