Cargando…

Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza

H1N1 is the most common subtype of influenza virus circulating worldwide and can cause severe disease in some populations. Early prediction and intervention for patients who develop severe influenza will greatly reduce their mortality. In this study, we conducted a comprehensive analysis of 180 PBMC...

Descripción completa

Detalles Bibliográficos
Autores principales: Lin, Siran, Peng, YuBing, Xu, Yuzhen, Zhang, Wei, Wu, Jing, Zhang, Wenhong, Shao, Lingyun, Gao, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764189/
https://www.ncbi.nlm.nih.gov/pubmed/35059324
http://dx.doi.org/10.3389/fcimb.2021.776840
_version_ 1784634110799511552
author Lin, Siran
Peng, YuBing
Xu, Yuzhen
Zhang, Wei
Wu, Jing
Zhang, Wenhong
Shao, Lingyun
Gao, Yan
author_facet Lin, Siran
Peng, YuBing
Xu, Yuzhen
Zhang, Wei
Wu, Jing
Zhang, Wenhong
Shao, Lingyun
Gao, Yan
author_sort Lin, Siran
collection PubMed
description H1N1 is the most common subtype of influenza virus circulating worldwide and can cause severe disease in some populations. Early prediction and intervention for patients who develop severe influenza will greatly reduce their mortality. In this study, we conducted a comprehensive analysis of 180 PBMC samples from three published datasets from the GEO DataSets. Differentially expressed gene (DEG) analysis and weighted correlation network analysis (WGCNA) were performed to provide candidate DEGs for model building. Functional enrichment and CIBERSORT analyses were also performed to evaluate the differences in composition and function of PBMCs between patients with severe and mild disease. Finally, a risk score model was built using lasso regression analysis, with six genes (CX3CR1, KLRD1, MMP8, PRTN3, RETN and SCD) involved. The model performed moderately in the early identification of patients that develop severe H1N1 disease.
format Online
Article
Text
id pubmed-8764189
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-87641892022-01-19 Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza Lin, Siran Peng, YuBing Xu, Yuzhen Zhang, Wei Wu, Jing Zhang, Wenhong Shao, Lingyun Gao, Yan Front Cell Infect Microbiol Cellular and Infection Microbiology H1N1 is the most common subtype of influenza virus circulating worldwide and can cause severe disease in some populations. Early prediction and intervention for patients who develop severe influenza will greatly reduce their mortality. In this study, we conducted a comprehensive analysis of 180 PBMC samples from three published datasets from the GEO DataSets. Differentially expressed gene (DEG) analysis and weighted correlation network analysis (WGCNA) were performed to provide candidate DEGs for model building. Functional enrichment and CIBERSORT analyses were also performed to evaluate the differences in composition and function of PBMCs between patients with severe and mild disease. Finally, a risk score model was built using lasso regression analysis, with six genes (CX3CR1, KLRD1, MMP8, PRTN3, RETN and SCD) involved. The model performed moderately in the early identification of patients that develop severe H1N1 disease. Frontiers Media S.A. 2022-01-04 /pmc/articles/PMC8764189/ /pubmed/35059324 http://dx.doi.org/10.3389/fcimb.2021.776840 Text en Copyright © 2022 Lin, Peng, Xu, Zhang, Wu, Zhang, Shao and Gao https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cellular and Infection Microbiology
Lin, Siran
Peng, YuBing
Xu, Yuzhen
Zhang, Wei
Wu, Jing
Zhang, Wenhong
Shao, Lingyun
Gao, Yan
Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza
title Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza
title_full Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza
title_fullStr Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza
title_full_unstemmed Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza
title_short Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza
title_sort establishment of a risk score model for early prediction of severe h1n1 influenza
topic Cellular and Infection Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764189/
https://www.ncbi.nlm.nih.gov/pubmed/35059324
http://dx.doi.org/10.3389/fcimb.2021.776840
work_keys_str_mv AT linsiran establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza
AT pengyubing establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza
AT xuyuzhen establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza
AT zhangwei establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza
AT wujing establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza
AT zhangwenhong establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza
AT shaolingyun establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza
AT gaoyan establishmentofariskscoremodelforearlypredictionofsevereh1n1influenza