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Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza
H1N1 is the most common subtype of influenza virus circulating worldwide and can cause severe disease in some populations. Early prediction and intervention for patients who develop severe influenza will greatly reduce their mortality. In this study, we conducted a comprehensive analysis of 180 PBMC...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764189/ https://www.ncbi.nlm.nih.gov/pubmed/35059324 http://dx.doi.org/10.3389/fcimb.2021.776840 |
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author | Lin, Siran Peng, YuBing Xu, Yuzhen Zhang, Wei Wu, Jing Zhang, Wenhong Shao, Lingyun Gao, Yan |
author_facet | Lin, Siran Peng, YuBing Xu, Yuzhen Zhang, Wei Wu, Jing Zhang, Wenhong Shao, Lingyun Gao, Yan |
author_sort | Lin, Siran |
collection | PubMed |
description | H1N1 is the most common subtype of influenza virus circulating worldwide and can cause severe disease in some populations. Early prediction and intervention for patients who develop severe influenza will greatly reduce their mortality. In this study, we conducted a comprehensive analysis of 180 PBMC samples from three published datasets from the GEO DataSets. Differentially expressed gene (DEG) analysis and weighted correlation network analysis (WGCNA) were performed to provide candidate DEGs for model building. Functional enrichment and CIBERSORT analyses were also performed to evaluate the differences in composition and function of PBMCs between patients with severe and mild disease. Finally, a risk score model was built using lasso regression analysis, with six genes (CX3CR1, KLRD1, MMP8, PRTN3, RETN and SCD) involved. The model performed moderately in the early identification of patients that develop severe H1N1 disease. |
format | Online Article Text |
id | pubmed-8764189 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87641892022-01-19 Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza Lin, Siran Peng, YuBing Xu, Yuzhen Zhang, Wei Wu, Jing Zhang, Wenhong Shao, Lingyun Gao, Yan Front Cell Infect Microbiol Cellular and Infection Microbiology H1N1 is the most common subtype of influenza virus circulating worldwide and can cause severe disease in some populations. Early prediction and intervention for patients who develop severe influenza will greatly reduce their mortality. In this study, we conducted a comprehensive analysis of 180 PBMC samples from three published datasets from the GEO DataSets. Differentially expressed gene (DEG) analysis and weighted correlation network analysis (WGCNA) were performed to provide candidate DEGs for model building. Functional enrichment and CIBERSORT analyses were also performed to evaluate the differences in composition and function of PBMCs between patients with severe and mild disease. Finally, a risk score model was built using lasso regression analysis, with six genes (CX3CR1, KLRD1, MMP8, PRTN3, RETN and SCD) involved. The model performed moderately in the early identification of patients that develop severe H1N1 disease. Frontiers Media S.A. 2022-01-04 /pmc/articles/PMC8764189/ /pubmed/35059324 http://dx.doi.org/10.3389/fcimb.2021.776840 Text en Copyright © 2022 Lin, Peng, Xu, Zhang, Wu, Zhang, Shao and Gao https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cellular and Infection Microbiology Lin, Siran Peng, YuBing Xu, Yuzhen Zhang, Wei Wu, Jing Zhang, Wenhong Shao, Lingyun Gao, Yan Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza |
title | Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza |
title_full | Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza |
title_fullStr | Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza |
title_full_unstemmed | Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza |
title_short | Establishment of a Risk Score Model for Early Prediction of Severe H1N1 Influenza |
title_sort | establishment of a risk score model for early prediction of severe h1n1 influenza |
topic | Cellular and Infection Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764189/ https://www.ncbi.nlm.nih.gov/pubmed/35059324 http://dx.doi.org/10.3389/fcimb.2021.776840 |
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