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Pooled testing efficiency increases with test frequency

Pooled testing increases efficiency by grouping individual samples and testing the combined sample, such that many individuals can be cleared with one negative test. This short paper demonstrates that pooled testing is particularly advantageous in the setting of pandemics, given repeated testing, ra...

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Autores principales: Augenblick, Ned, Kolstad, Jonathan, Obermeyer, Ziad, Wang, Ao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764680/
https://www.ncbi.nlm.nih.gov/pubmed/34983870
http://dx.doi.org/10.1073/pnas.2105180119
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author Augenblick, Ned
Kolstad, Jonathan
Obermeyer, Ziad
Wang, Ao
author_facet Augenblick, Ned
Kolstad, Jonathan
Obermeyer, Ziad
Wang, Ao
author_sort Augenblick, Ned
collection PubMed
description Pooled testing increases efficiency by grouping individual samples and testing the combined sample, such that many individuals can be cleared with one negative test. This short paper demonstrates that pooled testing is particularly advantageous in the setting of pandemics, given repeated testing, rapid spread, and uncertain risk. Repeated testing mechanically lowers the infection probability at the time of the next test by removing positives from the population. This effect alone means that increasing frequency by x times only increases expected tests by around [Formula: see text]. However, this calculation omits a further benefit of frequent testing: Removing infections from the population lowers intragroup transmission, which lowers infection probability and generates further efficiency. For this reason, increasing testing frequency can paradoxically reduce total testing cost. Our calculations are based on the assumption that infection rates are known, but predicting these rates is challenging in a fast-moving pandemic. However, given that frequent testing naturally suppresses the mean and variance of infection rates, we show that our results are very robust to uncertainty and misprediction. Finally, we note that efficiency further increases given natural sampling pools (e.g., workplaces, classrooms) that induce correlated risk via local transmission. We conclude that frequent pooled testing using natural groupings is a cost-effective way to provide consistent testing of a population to suppress infection risk in a pandemic.
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spelling pubmed-87646802022-07-04 Pooled testing efficiency increases with test frequency Augenblick, Ned Kolstad, Jonathan Obermeyer, Ziad Wang, Ao Proc Natl Acad Sci U S A Social Sciences Pooled testing increases efficiency by grouping individual samples and testing the combined sample, such that many individuals can be cleared with one negative test. This short paper demonstrates that pooled testing is particularly advantageous in the setting of pandemics, given repeated testing, rapid spread, and uncertain risk. Repeated testing mechanically lowers the infection probability at the time of the next test by removing positives from the population. This effect alone means that increasing frequency by x times only increases expected tests by around [Formula: see text]. However, this calculation omits a further benefit of frequent testing: Removing infections from the population lowers intragroup transmission, which lowers infection probability and generates further efficiency. For this reason, increasing testing frequency can paradoxically reduce total testing cost. Our calculations are based on the assumption that infection rates are known, but predicting these rates is challenging in a fast-moving pandemic. However, given that frequent testing naturally suppresses the mean and variance of infection rates, we show that our results are very robust to uncertainty and misprediction. Finally, we note that efficiency further increases given natural sampling pools (e.g., workplaces, classrooms) that induce correlated risk via local transmission. We conclude that frequent pooled testing using natural groupings is a cost-effective way to provide consistent testing of a population to suppress infection risk in a pandemic. National Academy of Sciences 2022-01-04 2022-01-11 /pmc/articles/PMC8764680/ /pubmed/34983870 http://dx.doi.org/10.1073/pnas.2105180119 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Social Sciences
Augenblick, Ned
Kolstad, Jonathan
Obermeyer, Ziad
Wang, Ao
Pooled testing efficiency increases with test frequency
title Pooled testing efficiency increases with test frequency
title_full Pooled testing efficiency increases with test frequency
title_fullStr Pooled testing efficiency increases with test frequency
title_full_unstemmed Pooled testing efficiency increases with test frequency
title_short Pooled testing efficiency increases with test frequency
title_sort pooled testing efficiency increases with test frequency
topic Social Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764680/
https://www.ncbi.nlm.nih.gov/pubmed/34983870
http://dx.doi.org/10.1073/pnas.2105180119
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