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Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis
BACKGROUND: Platinum-resistant cases account for 25% of ovarian cancer patients. Our aim was to construct two novel prognostic models based on gene expression data respectively from ferroptosis and necroptosis, for predicting the prognosis of advanced ovarian cancer patients with platinum treatment....
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764839/ https://www.ncbi.nlm.nih.gov/pubmed/35039008 http://dx.doi.org/10.1186/s12885-021-09166-9 |
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author | Li, Yang Gong, Xiaojin Hu, Tongxiu Chen, Yurong |
author_facet | Li, Yang Gong, Xiaojin Hu, Tongxiu Chen, Yurong |
author_sort | Li, Yang |
collection | PubMed |
description | BACKGROUND: Platinum-resistant cases account for 25% of ovarian cancer patients. Our aim was to construct two novel prognostic models based on gene expression data respectively from ferroptosis and necroptosis, for predicting the prognosis of advanced ovarian cancer patients with platinum treatment. METHODS: According to the different overall survivals, we screened differentially expressed genes (DEGs) from 85 ferroptosis-related and 159 necroptosis-related gene expression data in the GSE32062 cohort, to establish two ovarian cancer prognostic models based on calculating risk factors of DEGs, and log-rank test was used for statistical significance test of survival data. Subsequently, we validated the two models in the GSE26712 cohort and the GSE17260 cohort. In addition, we took gene enrichment and microenvironment analyses respectively using limma package and GSVA software to compare the differences between high- and low-risk ovarian cancer patients. RESULTS: We constructed two ovarian cancer prognostic models: a ferroptosis-related model based on eight-gene expression signature and a necroptosis-related model based on ten-gene expression signature. The two models performed well in the GSE26712 cohort, but the performance of necroptosis-related model was not well in the GSE17260 cohort. Gene enrichment and microenvironment analyses indicated that the main differences between high- and low- risk ovarian cancer patients occurred in the immune-related indexes, including the specific immune cells abundance and overall immune indexes. CONCLUSION: In this study, ovarian cancer prognostic models based on ferroptosis and necroptosis have been preliminarily validated in predicting prognosis of advanced patients treated with platinum drugs. And the risk score calculated by these two models reflected immune microenvironment. Future work is needed to find out other gene signatures and clinical characteristics to affect the accuracy and applicability of the two ovarian cancer prognostic models. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-021-09166-9. |
format | Online Article Text |
id | pubmed-8764839 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-87648392022-01-19 Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis Li, Yang Gong, Xiaojin Hu, Tongxiu Chen, Yurong BMC Cancer Research BACKGROUND: Platinum-resistant cases account for 25% of ovarian cancer patients. Our aim was to construct two novel prognostic models based on gene expression data respectively from ferroptosis and necroptosis, for predicting the prognosis of advanced ovarian cancer patients with platinum treatment. METHODS: According to the different overall survivals, we screened differentially expressed genes (DEGs) from 85 ferroptosis-related and 159 necroptosis-related gene expression data in the GSE32062 cohort, to establish two ovarian cancer prognostic models based on calculating risk factors of DEGs, and log-rank test was used for statistical significance test of survival data. Subsequently, we validated the two models in the GSE26712 cohort and the GSE17260 cohort. In addition, we took gene enrichment and microenvironment analyses respectively using limma package and GSVA software to compare the differences between high- and low-risk ovarian cancer patients. RESULTS: We constructed two ovarian cancer prognostic models: a ferroptosis-related model based on eight-gene expression signature and a necroptosis-related model based on ten-gene expression signature. The two models performed well in the GSE26712 cohort, but the performance of necroptosis-related model was not well in the GSE17260 cohort. Gene enrichment and microenvironment analyses indicated that the main differences between high- and low- risk ovarian cancer patients occurred in the immune-related indexes, including the specific immune cells abundance and overall immune indexes. CONCLUSION: In this study, ovarian cancer prognostic models based on ferroptosis and necroptosis have been preliminarily validated in predicting prognosis of advanced patients treated with platinum drugs. And the risk score calculated by these two models reflected immune microenvironment. Future work is needed to find out other gene signatures and clinical characteristics to affect the accuracy and applicability of the two ovarian cancer prognostic models. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-021-09166-9. BioMed Central 2022-01-17 /pmc/articles/PMC8764839/ /pubmed/35039008 http://dx.doi.org/10.1186/s12885-021-09166-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Li, Yang Gong, Xiaojin Hu, Tongxiu Chen, Yurong Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis |
title | Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis |
title_full | Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis |
title_fullStr | Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis |
title_full_unstemmed | Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis |
title_short | Two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis |
title_sort | two novel prognostic models for ovarian cancer respectively based on ferroptosis and necroptosis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8764839/ https://www.ncbi.nlm.nih.gov/pubmed/35039008 http://dx.doi.org/10.1186/s12885-021-09166-9 |
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