Cargando…

MinION™ Nanopore Sequencing of Skin Microbiome 16S and 16S-23S rRNA Gene Amplicons

Human skin microbiome dysbiosis can have clinical consequences. Characterizing taxonomic composition of bacterial communities associated with skin disorders is important for dermatological advancement in both diagnosis and novel treatments. This study aims to analyze and improve the accuracy of taxo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rozas, Miquel, Brillet, François, Callewaert, Chris, Paetzold, Bernhard
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2022
Materias:	Cellular and Infection Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8766866/ https://www.ncbi.nlm.nih.gov/pubmed/35071053 http://dx.doi.org/10.3389/fcimb.2021.806476

Ejemplares similares

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
por: Benítez-Páez, Alfonso, et al.
Publicado: (2016)

Rapid and Accurate Species Identification of Mitis Group Streptococci Using the MinION Nanopore Sequencer
por: Imai, Kazuo, et al.
Publicado: (2020)

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
por: Matsuo, Yoshiyuki, et al.
Publicado: (2021)

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer
por: Kai, Shinichi, et al.
Publicado: (2019)

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
por: Kilianski, Andy, et al.
Publicado: (2015)

A preliminary study on the potential of Nanopore MinION and Illumina MiSeq 16S rRNA gene sequencing to characterize building-dust microbiomes
por: Nygaard, Anders B., et al.
Publicado: (2020)

Impact of Bead-Beating Intensity on the Genus- and Species-Level Characterization of the Gut Microbiome Using Amplicon and Complete 16S rRNA Gene Sequencing
por: Zhang, Bo, et al.
Publicado: (2021)

Reprocessing 16S rRNA Gene Amplicon Sequencing Studies: (Meta)Data Issues, Robustness, and Reproducibility
por: Kang, Xiongbin, et al.
Publicado: (2021)

Proof of concept for multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer
por: Whitford, Whitney, et al.
Publicado: (2022)

Campylobacter fetus meningitis confirmed by a 16S rRNA gene analysis using the MinION nanopore sequencer, South Korea, 2016
por: Moon, Jangsup, et al.
Publicado: (2017)

MinION nanopore sequencing of an influenza genome
por: Wang, Jing, et al.
Publicado: (2015)

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2017)

Corrigendum: Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2018)

Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis
por: Hong, Nguyen Thi Thu, et al.
Publicado: (2020)

The effect of low-abundance OTU filtering methods on the reliability and variability of microbial composition assessed by 16S rRNA amplicon sequencing
por: Nikodemova, Maria, et al.
Publicado: (2023)

Assessing the performance of the Oxford Nanopore Technologies MinION
por: Laver, T., et al.
Publicado: (2015)

Oxford Nanopore MinION Sequencing and Genome Assembly
por: Lu, Hengyun, et al.
Publicado: (2016)

Improved data analysis for the MinION nanopore sequencer
por: Jain, Miten, et al.
Publicado: (2015)

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

Salivary Microbiome in Adenoid Cystic Carcinoma Detected by 16S rRNA Sequencing and Shotgun Metagenomics
por: Jiang, Qian, et al.
Publicado: (2021)

MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing
por: Taylor, William S., et al.
Publicado: (2020)

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

Forensic SNP Genotyping using Nanopore MinION Sequencing
por: Cornelis, Senne, et al.
Publicado: (2017)

Leveraging 16S rRNA Microbiome Sequencing Data to Identify Bacterial Signatures for Irritable Bowel Syndrome
por: Liu, Yuxia, et al.
Publicado: (2021)

Gut microbiome profiling of neonates using Nanopore MinION and Illumina MiSeq sequencing
por: Cha, Teahyen, et al.
Publicado: (2023)

Simultaneous amplicon analysis of multiple soil samples using MinION sequencing
por: Kurokochi, Hiroyuki, et al.
Publicado: (2021)

Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
por: Cuscó, Anna, et al.
Publicado: (2019)

Scaffolding of a bacterial genome using MinION nanopore sequencing
por: Karlsson, E., et al.
Publicado: (2015)

MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach
por: Brown, Bonnie L., et al.
Publicado: (2017)

Oxford Nanopore MinION Direct RNA-Seq for Systems Biology
por: Pyatnitskiy, Mikhail A., et al.
Publicado: (2021)

Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer
por: Benítez-Páez, Alfonso, et al.
Publicado: (2017)

Use of Oxford Nanopore MinION to generate full-length sequences of the Blastocystis small subunit (SSU) rRNA gene
por: Maloney, Jenny G., et al.
Publicado: (2020)

Rapid Multiplex Small DNA Sequencing on the MinION Nanopore Sequencing Platform
por: Wei, Shan, et al.
Publicado: (2018)

Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses
por: King, Jacqueline, et al.
Publicado: (2020)

Direct sequencing of RNA with MinION Nanopore: detecting mutations based on associations
por: Harel, Noam, et al.
Publicado: (2019)

MinION nanopore sequencing and assembly of a complete human papillomavirus genome
por: Brancaccio, Rosario N., et al.
Publicado: (2021)

Application of Nanopore Sequencing (MinION) for the Analysis of Bacteriome and Resistome of Bean Sprouts
por: Solcova, Milada, et al.
Publicado: (2021)

Development and Validation of a Reference Data Set for Assigning Staphylococcus Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region
por: Kosecka-Strojek, Maja, et al.
Publicado: (2019)

Significant Short-Term Shifts in the Microbiomes of Smokers With Periodontitis After Periodontal Therapy With Amoxicillin & Metronidazole as Revealed by 16S rDNA Amplicon Next Generation Sequencing
por: Hagenfeld, Daniel, et al.
Publicado: (2020)

Determining the Suitability of MinION’s Direct RNA and DNA Amplicon Sequencing for Viral Subtype Identification
por: Leigh, Deborah M., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_m7jh9e0qmf19t99prcjdrsl58d