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Predicting risk for trauma patients using static and dynamic information from the MIMIC III database
Risk quantification algorithms in the ICU can provide (1) an early alert to the clinician that a patient is at extreme risk and (2) help manage limited resources efficiently or remotely. With electronic health records, large data sets allow the training of predictive models to quantify patient risk....
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8769353/ https://www.ncbi.nlm.nih.gov/pubmed/35045100 http://dx.doi.org/10.1371/journal.pone.0262523 |
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author | Tsiklidis, Evan J. Sinno, Talid Diamond, Scott L. |
author_facet | Tsiklidis, Evan J. Sinno, Talid Diamond, Scott L. |
author_sort | Tsiklidis, Evan J. |
collection | PubMed |
description | Risk quantification algorithms in the ICU can provide (1) an early alert to the clinician that a patient is at extreme risk and (2) help manage limited resources efficiently or remotely. With electronic health records, large data sets allow the training of predictive models to quantify patient risk. A gradient boosting classifier was trained to predict high-risk and low-risk trauma patients, where patients were labeled high-risk if they expired within the next 10 hours or within the last 10% of their ICU stay duration. The MIMIC-III database was filtered to extract 5,400 trauma patient records (526 non-survivors) each of which contained 5 static variables (age, gender, etc.) and 28 dynamic variables (e.g., vital signs and metabolic panel). Training data was also extracted from the dynamic variables using a 3-hour moving time window whereby each window was treated as a unique patient-time fragment. We extracted the mean, standard deviation, and skew from each of these 3-hour fragments and included them as inputs for training. Additionally, a survival metric upon admission was calculated for each patient using a previously developed National Trauma Data Bank (NTDB)-trained gradient booster model. The final model was able to distinguish between high-risk and low-risk patients to an AUROC of 92.9%, defined as the area under the receiver operator characteristic curve. Importantly, the dynamic survival probability plots for patients who die appear considerably different from those who survive, an example of reducing the high dimensionality of the patient record to a single trauma trajectory. |
format | Online Article Text |
id | pubmed-8769353 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-87693532022-01-20 Predicting risk for trauma patients using static and dynamic information from the MIMIC III database Tsiklidis, Evan J. Sinno, Talid Diamond, Scott L. PLoS One Research Article Risk quantification algorithms in the ICU can provide (1) an early alert to the clinician that a patient is at extreme risk and (2) help manage limited resources efficiently or remotely. With electronic health records, large data sets allow the training of predictive models to quantify patient risk. A gradient boosting classifier was trained to predict high-risk and low-risk trauma patients, where patients were labeled high-risk if they expired within the next 10 hours or within the last 10% of their ICU stay duration. The MIMIC-III database was filtered to extract 5,400 trauma patient records (526 non-survivors) each of which contained 5 static variables (age, gender, etc.) and 28 dynamic variables (e.g., vital signs and metabolic panel). Training data was also extracted from the dynamic variables using a 3-hour moving time window whereby each window was treated as a unique patient-time fragment. We extracted the mean, standard deviation, and skew from each of these 3-hour fragments and included them as inputs for training. Additionally, a survival metric upon admission was calculated for each patient using a previously developed National Trauma Data Bank (NTDB)-trained gradient booster model. The final model was able to distinguish between high-risk and low-risk patients to an AUROC of 92.9%, defined as the area under the receiver operator characteristic curve. Importantly, the dynamic survival probability plots for patients who die appear considerably different from those who survive, an example of reducing the high dimensionality of the patient record to a single trauma trajectory. Public Library of Science 2022-01-19 /pmc/articles/PMC8769353/ /pubmed/35045100 http://dx.doi.org/10.1371/journal.pone.0262523 Text en © 2022 Tsiklidis et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Tsiklidis, Evan J. Sinno, Talid Diamond, Scott L. Predicting risk for trauma patients using static and dynamic information from the MIMIC III database |
title | Predicting risk for trauma patients using static and dynamic information from the MIMIC III database |
title_full | Predicting risk for trauma patients using static and dynamic information from the MIMIC III database |
title_fullStr | Predicting risk for trauma patients using static and dynamic information from the MIMIC III database |
title_full_unstemmed | Predicting risk for trauma patients using static and dynamic information from the MIMIC III database |
title_short | Predicting risk for trauma patients using static and dynamic information from the MIMIC III database |
title_sort | predicting risk for trauma patients using static and dynamic information from the mimic iii database |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8769353/ https://www.ncbi.nlm.nih.gov/pubmed/35045100 http://dx.doi.org/10.1371/journal.pone.0262523 |
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