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The complete chloroplast genome sequence of Hibiscus coccineus
Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the comp...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8774145/ https://www.ncbi.nlm.nih.gov/pubmed/35071761 http://dx.doi.org/10.1080/23802359.2021.2022545 |
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author | Wang, Zhiquan Yang, Hong Zhang, Fengjiao Yin, Yunlong Gu, Chunsun |
author_facet | Wang, Zhiquan Yang, Hong Zhang, Fengjiao Yin, Yunlong Gu, Chunsun |
author_sort | Wang, Zhiquan |
collection | PubMed |
description | Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the complete chloroplast genome sequence, which will provide more genomic information for studying the genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 160,280 bp, composed of a large single-copy (LSC) region of 89,121 bp, a small single-copy (SSC) region of 18,673 bp, and two inverted repeats (IRs) of 26,243 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic tree analysis revealed that the Hibiscus coccineus is closest to Hibiscus mutabilis in the Hibiscus L. |
format | Online Article Text |
id | pubmed-8774145 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-87741452022-01-21 The complete chloroplast genome sequence of Hibiscus coccineus Wang, Zhiquan Yang, Hong Zhang, Fengjiao Yin, Yunlong Gu, Chunsun Mitochondrial DNA B Resour Mitogenome Announcement Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the complete chloroplast genome sequence, which will provide more genomic information for studying the genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 160,280 bp, composed of a large single-copy (LSC) region of 89,121 bp, a small single-copy (SSC) region of 18,673 bp, and two inverted repeats (IRs) of 26,243 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic tree analysis revealed that the Hibiscus coccineus is closest to Hibiscus mutabilis in the Hibiscus L. Taylor & Francis 2022-01-19 /pmc/articles/PMC8774145/ /pubmed/35071761 http://dx.doi.org/10.1080/23802359.2021.2022545 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wang, Zhiquan Yang, Hong Zhang, Fengjiao Yin, Yunlong Gu, Chunsun The complete chloroplast genome sequence of Hibiscus coccineus |
title | The complete chloroplast genome sequence of Hibiscus coccineus |
title_full | The complete chloroplast genome sequence of Hibiscus coccineus |
title_fullStr | The complete chloroplast genome sequence of Hibiscus coccineus |
title_full_unstemmed | The complete chloroplast genome sequence of Hibiscus coccineus |
title_short | The complete chloroplast genome sequence of Hibiscus coccineus |
title_sort | complete chloroplast genome sequence of hibiscus coccineus |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8774145/ https://www.ncbi.nlm.nih.gov/pubmed/35071761 http://dx.doi.org/10.1080/23802359.2021.2022545 |
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