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The complete chloroplast genome sequence of Hibiscus coccineus

Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the comp...

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Autores principales: Wang, Zhiquan, Yang, Hong, Zhang, Fengjiao, Yin, Yunlong, Gu, Chunsun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8774145/
https://www.ncbi.nlm.nih.gov/pubmed/35071761
http://dx.doi.org/10.1080/23802359.2021.2022545
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author Wang, Zhiquan
Yang, Hong
Zhang, Fengjiao
Yin, Yunlong
Gu, Chunsun
author_facet Wang, Zhiquan
Yang, Hong
Zhang, Fengjiao
Yin, Yunlong
Gu, Chunsun
author_sort Wang, Zhiquan
collection PubMed
description Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the complete chloroplast genome sequence, which will provide more genomic information for studying the genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 160,280 bp, composed of a large single-copy (LSC) region of 89,121 bp, a small single-copy (SSC) region of 18,673 bp, and two inverted repeats (IRs) of 26,243 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic tree analysis revealed that the Hibiscus coccineus is closest to Hibiscus mutabilis in the Hibiscus L.
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spelling pubmed-87741452022-01-21 The complete chloroplast genome sequence of Hibiscus coccineus Wang, Zhiquan Yang, Hong Zhang, Fengjiao Yin, Yunlong Gu, Chunsun Mitochondrial DNA B Resour Mitogenome Announcement Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the complete chloroplast genome sequence, which will provide more genomic information for studying the genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 160,280 bp, composed of a large single-copy (LSC) region of 89,121 bp, a small single-copy (SSC) region of 18,673 bp, and two inverted repeats (IRs) of 26,243 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic tree analysis revealed that the Hibiscus coccineus is closest to Hibiscus mutabilis in the Hibiscus L. Taylor & Francis 2022-01-19 /pmc/articles/PMC8774145/ /pubmed/35071761 http://dx.doi.org/10.1080/23802359.2021.2022545 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Zhiquan
Yang, Hong
Zhang, Fengjiao
Yin, Yunlong
Gu, Chunsun
The complete chloroplast genome sequence of Hibiscus coccineus
title The complete chloroplast genome sequence of Hibiscus coccineus
title_full The complete chloroplast genome sequence of Hibiscus coccineus
title_fullStr The complete chloroplast genome sequence of Hibiscus coccineus
title_full_unstemmed The complete chloroplast genome sequence of Hibiscus coccineus
title_short The complete chloroplast genome sequence of Hibiscus coccineus
title_sort complete chloroplast genome sequence of hibiscus coccineus
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8774145/
https://www.ncbi.nlm.nih.gov/pubmed/35071761
http://dx.doi.org/10.1080/23802359.2021.2022545
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