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Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques
Biomarker identification is very important to differentiate the grade groups in the histopathological sections of prostate cancer (PCa). Assessing the cluster of cell nuclei is essential for pathological investigation. In this study, we present a computer-based method for cluster analyses of cell nu...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8774423/ https://www.ncbi.nlm.nih.gov/pubmed/35054182 http://dx.doi.org/10.3390/diagnostics12010015 |
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author | Bhattacharjee, Subrata Ikromjanov, Kobiljon Carole, Kouayep Sonia Madusanka, Nuwan Cho, Nam-Hoon Hwang, Yeong-Byn Sumon, Rashadul Islam Kim, Hee-Cheol Choi, Heung-Kook |
author_facet | Bhattacharjee, Subrata Ikromjanov, Kobiljon Carole, Kouayep Sonia Madusanka, Nuwan Cho, Nam-Hoon Hwang, Yeong-Byn Sumon, Rashadul Islam Kim, Hee-Cheol Choi, Heung-Kook |
author_sort | Bhattacharjee, Subrata |
collection | PubMed |
description | Biomarker identification is very important to differentiate the grade groups in the histopathological sections of prostate cancer (PCa). Assessing the cluster of cell nuclei is essential for pathological investigation. In this study, we present a computer-based method for cluster analyses of cell nuclei and performed traditional (i.e., unsupervised method) and modern (i.e., supervised method) artificial intelligence (AI) techniques for distinguishing the grade groups of PCa. Two datasets on PCa were collected to carry out this research. Histopathology samples were obtained from whole slides stained with hematoxylin and eosin (H&E). In this research, state-of-the-art approaches were proposed for color normalization, cell nuclei segmentation, feature selection, and classification. A traditional minimum spanning tree (MST) algorithm was employed to identify the clusters and better capture the proliferation and community structure of cell nuclei. K-medoids clustering and stacked ensemble machine learning (ML) approaches were used to perform traditional and modern AI-based classification. The binary and multiclass classification was derived to compare the model quality and results between the grades of PCa. Furthermore, a comparative analysis was carried out between traditional and modern AI techniques using different performance metrics (i.e., statistical parameters). Cluster features of the cell nuclei can be useful information for cancer grading. However, further validation of cluster analysis is required to accomplish astounding classification results. |
format | Online Article Text |
id | pubmed-8774423 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-87744232022-01-21 Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques Bhattacharjee, Subrata Ikromjanov, Kobiljon Carole, Kouayep Sonia Madusanka, Nuwan Cho, Nam-Hoon Hwang, Yeong-Byn Sumon, Rashadul Islam Kim, Hee-Cheol Choi, Heung-Kook Diagnostics (Basel) Article Biomarker identification is very important to differentiate the grade groups in the histopathological sections of prostate cancer (PCa). Assessing the cluster of cell nuclei is essential for pathological investigation. In this study, we present a computer-based method for cluster analyses of cell nuclei and performed traditional (i.e., unsupervised method) and modern (i.e., supervised method) artificial intelligence (AI) techniques for distinguishing the grade groups of PCa. Two datasets on PCa were collected to carry out this research. Histopathology samples were obtained from whole slides stained with hematoxylin and eosin (H&E). In this research, state-of-the-art approaches were proposed for color normalization, cell nuclei segmentation, feature selection, and classification. A traditional minimum spanning tree (MST) algorithm was employed to identify the clusters and better capture the proliferation and community structure of cell nuclei. K-medoids clustering and stacked ensemble machine learning (ML) approaches were used to perform traditional and modern AI-based classification. The binary and multiclass classification was derived to compare the model quality and results between the grades of PCa. Furthermore, a comparative analysis was carried out between traditional and modern AI techniques using different performance metrics (i.e., statistical parameters). Cluster features of the cell nuclei can be useful information for cancer grading. However, further validation of cluster analysis is required to accomplish astounding classification results. MDPI 2021-12-22 /pmc/articles/PMC8774423/ /pubmed/35054182 http://dx.doi.org/10.3390/diagnostics12010015 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Bhattacharjee, Subrata Ikromjanov, Kobiljon Carole, Kouayep Sonia Madusanka, Nuwan Cho, Nam-Hoon Hwang, Yeong-Byn Sumon, Rashadul Islam Kim, Hee-Cheol Choi, Heung-Kook Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques |
title | Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques |
title_full | Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques |
title_fullStr | Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques |
title_full_unstemmed | Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques |
title_short | Cluster Analysis of Cell Nuclei in H&E-Stained Histological Sections of Prostate Cancer and Classification Based on Traditional and Modern Artificial Intelligence Techniques |
title_sort | cluster analysis of cell nuclei in h&e-stained histological sections of prostate cancer and classification based on traditional and modern artificial intelligence techniques |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8774423/ https://www.ncbi.nlm.nih.gov/pubmed/35054182 http://dx.doi.org/10.3390/diagnostics12010015 |
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