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Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles
Chrysotila is a genus of coccolithophores. Together with Emiliania, it is one of the representative genera in the Haptophyta which have been extensively studied. They are photosynthetic unicellular marine algae sharing the common characteristic of the production of CaCO(3) platelets (coccoliths) on...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8775090/ https://www.ncbi.nlm.nih.gov/pubmed/35052381 http://dx.doi.org/10.3390/genes13010040 |
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author | Meng, Ran Zhang, Lin Zhou, Chengxu Liao, Kai Xiao, Peng Luo, Qijun Xu, Jilin Cui, Yanze Hu, Xiaodi Yan, Xiaojun |
author_facet | Meng, Ran Zhang, Lin Zhou, Chengxu Liao, Kai Xiao, Peng Luo, Qijun Xu, Jilin Cui, Yanze Hu, Xiaodi Yan, Xiaojun |
author_sort | Meng, Ran |
collection | PubMed |
description | Chrysotila is a genus of coccolithophores. Together with Emiliania, it is one of the representative genera in the Haptophyta which have been extensively studied. They are photosynthetic unicellular marine algae sharing the common characteristic of the production of CaCO(3) platelets (coccoliths) on the surface of their cells and are crucial contributors to global biogeochemical cycles. Here, we report the genome assembly of Chrysotila roscoffensis. The assembled genome size was ~636 Mb distributed across 769 scaffolds with N50 of 1.63 Mb, and maximum contig length of ~2.6 Mb. Repetitive elements accounted for approximately 59% of the genome. A total of 23,341 genes were predicted from C. roscoffensis genome. The divergence time between C. roscoffensis and Emiliania huxleyi was estimated to be around 537.6 Mya. Gene families related to cytoskeleton, cellular motility and morphology, and ion transport were expanded. The genome of C. roscoffensis will provide a foundation for understanding the genetic and phenotypic diversification and calcification mechanisms of coccolithophores. |
format | Online Article Text |
id | pubmed-8775090 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-87750902022-01-21 Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles Meng, Ran Zhang, Lin Zhou, Chengxu Liao, Kai Xiao, Peng Luo, Qijun Xu, Jilin Cui, Yanze Hu, Xiaodi Yan, Xiaojun Genes (Basel) Article Chrysotila is a genus of coccolithophores. Together with Emiliania, it is one of the representative genera in the Haptophyta which have been extensively studied. They are photosynthetic unicellular marine algae sharing the common characteristic of the production of CaCO(3) platelets (coccoliths) on the surface of their cells and are crucial contributors to global biogeochemical cycles. Here, we report the genome assembly of Chrysotila roscoffensis. The assembled genome size was ~636 Mb distributed across 769 scaffolds with N50 of 1.63 Mb, and maximum contig length of ~2.6 Mb. Repetitive elements accounted for approximately 59% of the genome. A total of 23,341 genes were predicted from C. roscoffensis genome. The divergence time between C. roscoffensis and Emiliania huxleyi was estimated to be around 537.6 Mya. Gene families related to cytoskeleton, cellular motility and morphology, and ion transport were expanded. The genome of C. roscoffensis will provide a foundation for understanding the genetic and phenotypic diversification and calcification mechanisms of coccolithophores. MDPI 2021-12-23 /pmc/articles/PMC8775090/ /pubmed/35052381 http://dx.doi.org/10.3390/genes13010040 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Meng, Ran Zhang, Lin Zhou, Chengxu Liao, Kai Xiao, Peng Luo, Qijun Xu, Jilin Cui, Yanze Hu, Xiaodi Yan, Xiaojun Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles |
title | Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles |
title_full | Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles |
title_fullStr | Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles |
title_full_unstemmed | Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles |
title_short | Genome Sequence of Chrysotila roscoffensis, a Coccolithphore Contributed to Global Biogeochemical Cycles |
title_sort | genome sequence of chrysotila roscoffensis, a coccolithphore contributed to global biogeochemical cycles |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8775090/ https://www.ncbi.nlm.nih.gov/pubmed/35052381 http://dx.doi.org/10.3390/genes13010040 |
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