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Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature

Multimeric protein assemblies are abundant in nature. Streptavidin is an attractive protein that provides a paradigm system to investigate the intra- and intermolecular interactions of multimeric protein complexes. Also, it offers a versatile tool for biotechnological applications. Here, we present...

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Autores principales: Ayan, Esra, Yuksel, Busra, Destan, Ebru, Ertem, Fatma Betul, Yildirim, Gunseli, Eren, Meryem, Yefanov, Oleksandr M., Barty, Anton, Tolstikova, Alexandra, Ketawala, Gihan K., Botha, Sabine, Dao, E. Han, Hayes, Brandon, Liang, Mengning, Seaberg, Matthew H., Hunter, Mark S., Batyuk, Alexander, Mariani, Valerio, Su, Zhen, Poitevin, Frederic, Yoon, Chun Hong, Kupitz, Christopher, Cohen, Aina, Doukov, Tzanko, Sierra, Raymond G., Dağ, Çağdaş, DeMirci, Hasan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8776744/
https://www.ncbi.nlm.nih.gov/pubmed/35058563
http://dx.doi.org/10.1038/s42003-021-02903-7
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author Ayan, Esra
Yuksel, Busra
Destan, Ebru
Ertem, Fatma Betul
Yildirim, Gunseli
Eren, Meryem
Yefanov, Oleksandr M.
Barty, Anton
Tolstikova, Alexandra
Ketawala, Gihan K.
Botha, Sabine
Dao, E. Han
Hayes, Brandon
Liang, Mengning
Seaberg, Matthew H.
Hunter, Mark S.
Batyuk, Alexander
Mariani, Valerio
Su, Zhen
Poitevin, Frederic
Yoon, Chun Hong
Kupitz, Christopher
Cohen, Aina
Doukov, Tzanko
Sierra, Raymond G.
Dağ, Çağdaş
DeMirci, Hasan
author_facet Ayan, Esra
Yuksel, Busra
Destan, Ebru
Ertem, Fatma Betul
Yildirim, Gunseli
Eren, Meryem
Yefanov, Oleksandr M.
Barty, Anton
Tolstikova, Alexandra
Ketawala, Gihan K.
Botha, Sabine
Dao, E. Han
Hayes, Brandon
Liang, Mengning
Seaberg, Matthew H.
Hunter, Mark S.
Batyuk, Alexander
Mariani, Valerio
Su, Zhen
Poitevin, Frederic
Yoon, Chun Hong
Kupitz, Christopher
Cohen, Aina
Doukov, Tzanko
Sierra, Raymond G.
Dağ, Çağdaş
DeMirci, Hasan
author_sort Ayan, Esra
collection PubMed
description Multimeric protein assemblies are abundant in nature. Streptavidin is an attractive protein that provides a paradigm system to investigate the intra- and intermolecular interactions of multimeric protein complexes. Also, it offers a versatile tool for biotechnological applications. Here, we present two apo-streptavidin structures, the first one is an ambient temperature Serial Femtosecond X-ray crystal (Apo-SFX) structure at 1.7 Å resolution and the second one is a cryogenic crystal structure (Apo-Cryo) at 1.1 Å resolution. These structures are mostly in agreement with previous structural data. Combined with computational analysis, these structures provide invaluable information about structural dynamics of apo streptavidin. Collectively, these data further reveal a novel cooperative allostery of streptavidin which binds to substrate via water molecules that provide a polar interaction network and mimics the substrate biotin which displays one of the strongest affinities found in nature.
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spelling pubmed-87767442022-02-04 Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature Ayan, Esra Yuksel, Busra Destan, Ebru Ertem, Fatma Betul Yildirim, Gunseli Eren, Meryem Yefanov, Oleksandr M. Barty, Anton Tolstikova, Alexandra Ketawala, Gihan K. Botha, Sabine Dao, E. Han Hayes, Brandon Liang, Mengning Seaberg, Matthew H. Hunter, Mark S. Batyuk, Alexander Mariani, Valerio Su, Zhen Poitevin, Frederic Yoon, Chun Hong Kupitz, Christopher Cohen, Aina Doukov, Tzanko Sierra, Raymond G. Dağ, Çağdaş DeMirci, Hasan Commun Biol Article Multimeric protein assemblies are abundant in nature. Streptavidin is an attractive protein that provides a paradigm system to investigate the intra- and intermolecular interactions of multimeric protein complexes. Also, it offers a versatile tool for biotechnological applications. Here, we present two apo-streptavidin structures, the first one is an ambient temperature Serial Femtosecond X-ray crystal (Apo-SFX) structure at 1.7 Å resolution and the second one is a cryogenic crystal structure (Apo-Cryo) at 1.1 Å resolution. These structures are mostly in agreement with previous structural data. Combined with computational analysis, these structures provide invaluable information about structural dynamics of apo streptavidin. Collectively, these data further reveal a novel cooperative allostery of streptavidin which binds to substrate via water molecules that provide a polar interaction network and mimics the substrate biotin which displays one of the strongest affinities found in nature. Nature Publishing Group UK 2022-01-20 /pmc/articles/PMC8776744/ /pubmed/35058563 http://dx.doi.org/10.1038/s42003-021-02903-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ayan, Esra
Yuksel, Busra
Destan, Ebru
Ertem, Fatma Betul
Yildirim, Gunseli
Eren, Meryem
Yefanov, Oleksandr M.
Barty, Anton
Tolstikova, Alexandra
Ketawala, Gihan K.
Botha, Sabine
Dao, E. Han
Hayes, Brandon
Liang, Mengning
Seaberg, Matthew H.
Hunter, Mark S.
Batyuk, Alexander
Mariani, Valerio
Su, Zhen
Poitevin, Frederic
Yoon, Chun Hong
Kupitz, Christopher
Cohen, Aina
Doukov, Tzanko
Sierra, Raymond G.
Dağ, Çağdaş
DeMirci, Hasan
Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature
title Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature
title_full Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature
title_fullStr Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature
title_full_unstemmed Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature
title_short Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature
title_sort cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8776744/
https://www.ncbi.nlm.nih.gov/pubmed/35058563
http://dx.doi.org/10.1038/s42003-021-02903-7
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