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The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance

Computational tools can transform the manner by which neuroscientists perform their experiments. More than helping researchers to manage the complexity of experimental data, these tools can increase the value of experiments by enabling reproducibility and supporting the sharing and reuse of data. De...

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Autores principales: Ruiz-Olazar, Margarita, Rocha, Evandro Santos, Vargas, Claudia D., Braghetto, Kelly Rosa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777234/
https://www.ncbi.nlm.nih.gov/pubmed/35069167
http://dx.doi.org/10.3389/fninf.2021.768615
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author Ruiz-Olazar, Margarita
Rocha, Evandro Santos
Vargas, Claudia D.
Braghetto, Kelly Rosa
author_facet Ruiz-Olazar, Margarita
Rocha, Evandro Santos
Vargas, Claudia D.
Braghetto, Kelly Rosa
author_sort Ruiz-Olazar, Margarita
collection PubMed
description Computational tools can transform the manner by which neuroscientists perform their experiments. More than helping researchers to manage the complexity of experimental data, these tools can increase the value of experiments by enabling reproducibility and supporting the sharing and reuse of data. Despite the remarkable advances made in the Neuroinformatics field in recent years, there is still a lack of open-source computational tools to cope with the heterogeneity and volume of neuroscientific data and the related metadata that needs to be collected during an experiment and stored for posterior analysis. In this work, we present the Neuroscience Experiments System (NES), a free software to assist researchers in data collecting routines of clinical, electrophysiological, and behavioral experiments. NES enables researchers to efficiently perform the management of their experimental data in a secure and user-friendly environment, providing a unified repository for the experimental data of an entire research group. Furthermore, its modular software architecture is aligned with several initiatives of the neuroscience community and promotes standardized data formats for experiments and analysis reporting.
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spelling pubmed-87772342022-01-22 The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance Ruiz-Olazar, Margarita Rocha, Evandro Santos Vargas, Claudia D. Braghetto, Kelly Rosa Front Neuroinform Neuroscience Computational tools can transform the manner by which neuroscientists perform their experiments. More than helping researchers to manage the complexity of experimental data, these tools can increase the value of experiments by enabling reproducibility and supporting the sharing and reuse of data. Despite the remarkable advances made in the Neuroinformatics field in recent years, there is still a lack of open-source computational tools to cope with the heterogeneity and volume of neuroscientific data and the related metadata that needs to be collected during an experiment and stored for posterior analysis. In this work, we present the Neuroscience Experiments System (NES), a free software to assist researchers in data collecting routines of clinical, electrophysiological, and behavioral experiments. NES enables researchers to efficiently perform the management of their experimental data in a secure and user-friendly environment, providing a unified repository for the experimental data of an entire research group. Furthermore, its modular software architecture is aligned with several initiatives of the neuroscience community and promotes standardized data formats for experiments and analysis reporting. Frontiers Media S.A. 2022-01-07 /pmc/articles/PMC8777234/ /pubmed/35069167 http://dx.doi.org/10.3389/fninf.2021.768615 Text en Copyright © 2022 Ruiz-Olazar, Rocha, Vargas and Braghetto. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Ruiz-Olazar, Margarita
Rocha, Evandro Santos
Vargas, Claudia D.
Braghetto, Kelly Rosa
The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance
title The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance
title_full The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance
title_fullStr The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance
title_full_unstemmed The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance
title_short The Neuroscience Experiments System (NES)–A Software Tool to Manage Experimental Data and Its Provenance
title_sort neuroscience experiments system (nes)–a software tool to manage experimental data and its provenance
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777234/
https://www.ncbi.nlm.nih.gov/pubmed/35069167
http://dx.doi.org/10.3389/fninf.2021.768615
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