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Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus
The metabolic processes of organisms are very complex. Each process is crucial and affects the growth, development, and reproduction of organisms. Metabolism-related mechanisms in Octopus ocellatus behaviors have not been widely studied. Brood-care is a common behavior in most organisms, which can i...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777255/ https://www.ncbi.nlm.nih.gov/pubmed/35069236 http://dx.doi.org/10.3389/fphys.2021.762681 |
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author | Bao, Xiaokai Liu, Xiumei Yu, Benshu Li, Yan Cui, Mingxian Wang, Weijun Feng, Yanwei Xu, Xiaohui Sun, Guohua Li, Bin Li, Zan Yang, Jianmin |
author_facet | Bao, Xiaokai Liu, Xiumei Yu, Benshu Li, Yan Cui, Mingxian Wang, Weijun Feng, Yanwei Xu, Xiaohui Sun, Guohua Li, Bin Li, Zan Yang, Jianmin |
author_sort | Bao, Xiaokai |
collection | PubMed |
description | The metabolic processes of organisms are very complex. Each process is crucial and affects the growth, development, and reproduction of organisms. Metabolism-related mechanisms in Octopus ocellatus behaviors have not been widely studied. Brood-care is a common behavior in most organisms, which can improve the survival rate and constitution of larvae. Octopus ocellatus carried out this behavior, but it was rarely noticed by researchers before. In our study, 3,486 differentially expressed genes (DEGs) were identified based on transcriptome analysis of O. ocellatus. We identify metabolism-related DEGs using GO and KEGG enrichment analyses. Then, we construct protein–protein interaction networks to search the functional relationships between metabolism-related DEGs. Finally, we identified 10 hub genes related to multiple gene functions or involved in multiple signal pathways and verified them using quantitative real-time polymerase chain reaction (qRT-PCR). Protein–protein interaction networks were first used to study the effects of brood-care behavior on metabolism in the process of growing of O. ocellatus larvae, and the results provide us valuable genetic resources for understanding the metabolic processes of invertebrate larvae. The data lay a foundation for further study the brood-care behavior and metabolic mechanisms of invertebrates. |
format | Online Article Text |
id | pubmed-8777255 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87772552022-01-22 Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus Bao, Xiaokai Liu, Xiumei Yu, Benshu Li, Yan Cui, Mingxian Wang, Weijun Feng, Yanwei Xu, Xiaohui Sun, Guohua Li, Bin Li, Zan Yang, Jianmin Front Physiol Physiology The metabolic processes of organisms are very complex. Each process is crucial and affects the growth, development, and reproduction of organisms. Metabolism-related mechanisms in Octopus ocellatus behaviors have not been widely studied. Brood-care is a common behavior in most organisms, which can improve the survival rate and constitution of larvae. Octopus ocellatus carried out this behavior, but it was rarely noticed by researchers before. In our study, 3,486 differentially expressed genes (DEGs) were identified based on transcriptome analysis of O. ocellatus. We identify metabolism-related DEGs using GO and KEGG enrichment analyses. Then, we construct protein–protein interaction networks to search the functional relationships between metabolism-related DEGs. Finally, we identified 10 hub genes related to multiple gene functions or involved in multiple signal pathways and verified them using quantitative real-time polymerase chain reaction (qRT-PCR). Protein–protein interaction networks were first used to study the effects of brood-care behavior on metabolism in the process of growing of O. ocellatus larvae, and the results provide us valuable genetic resources for understanding the metabolic processes of invertebrate larvae. The data lay a foundation for further study the brood-care behavior and metabolic mechanisms of invertebrates. Frontiers Media S.A. 2022-01-07 /pmc/articles/PMC8777255/ /pubmed/35069236 http://dx.doi.org/10.3389/fphys.2021.762681 Text en Copyright © 2022 Bao, Liu, Yu, Li, Cui, Wang, Feng, Xu, Sun, Li, Li and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Bao, Xiaokai Liu, Xiumei Yu, Benshu Li, Yan Cui, Mingxian Wang, Weijun Feng, Yanwei Xu, Xiaohui Sun, Guohua Li, Bin Li, Zan Yang, Jianmin Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus |
title | Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus |
title_full | Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus |
title_fullStr | Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus |
title_full_unstemmed | Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus |
title_short | Transcriptome Profiling Based on Larvae at Different Time Points After Hatching Provides a Core Set of Gene Resource for Understanding the Metabolic Mechanisms of the Brood-Care Behavior in Octopus ocellatus |
title_sort | transcriptome profiling based on larvae at different time points after hatching provides a core set of gene resource for understanding the metabolic mechanisms of the brood-care behavior in octopus ocellatus |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777255/ https://www.ncbi.nlm.nih.gov/pubmed/35069236 http://dx.doi.org/10.3389/fphys.2021.762681 |
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