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Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer
Gastric cancer (GC) has a great fatality rate, meanwhile, there is still a lack of available biomarkers for prognosis. The goal of the research was to discover key and novel potential biomarkers for GC. We screened for the expression of significantly altered genes based on survival rates from two co...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777542/ https://www.ncbi.nlm.nih.gov/pubmed/35201473 http://dx.doi.org/10.1007/s12672-021-00434-5 |
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author | Yu, Xin Yu, Bin Fang, Weidan Xiong, Jianping Ma, Mei |
author_facet | Yu, Xin Yu, Bin Fang, Weidan Xiong, Jianping Ma, Mei |
author_sort | Yu, Xin |
collection | PubMed |
description | Gastric cancer (GC) has a great fatality rate, meanwhile, there is still a lack of available biomarkers for prognosis. The goal of the research was to discover key and novel potential biomarkers for GC. We screened for the expression of significantly altered genes based on survival rates from two consensus molecular subtypes (CMS) of GC. Subsequently, functional enrichment analysis showed these genes involved in many cancers. And we picked 6 hub genes that could both secreted in the tumor microenvironment and expression enhanced in immune cells. Then, Kaplan Meier survival and expression detected in the tumor pathological stage were utilized to clarify the prognostic of these 6 hub genes. The results indicated that OGN, CHRDL2, C2orf40, THBS4, CHRDL1, and ANGPTL1, respectively, were significantly associated with poor OS in GC patients. And their expression increased with cancer advanced. Moreover, immune infiltration analysis displayed that those hub genes expression positively with M2 macrophage, CD8+ T Cell, most immune inhibitors, and majority immunostimulators. In summary, our results suggested that OGN, CHRDL2, C2orf40, THBS4, CHRDL1, and ANGPTL1 were all potential biomarkers for GC prognosis and might also be potential therapeutic targets for GC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12672-021-00434-5. |
format | Online Article Text |
id | pubmed-8777542 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-87775422022-02-03 Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer Yu, Xin Yu, Bin Fang, Weidan Xiong, Jianping Ma, Mei Discov Oncol Research Gastric cancer (GC) has a great fatality rate, meanwhile, there is still a lack of available biomarkers for prognosis. The goal of the research was to discover key and novel potential biomarkers for GC. We screened for the expression of significantly altered genes based on survival rates from two consensus molecular subtypes (CMS) of GC. Subsequently, functional enrichment analysis showed these genes involved in many cancers. And we picked 6 hub genes that could both secreted in the tumor microenvironment and expression enhanced in immune cells. Then, Kaplan Meier survival and expression detected in the tumor pathological stage were utilized to clarify the prognostic of these 6 hub genes. The results indicated that OGN, CHRDL2, C2orf40, THBS4, CHRDL1, and ANGPTL1, respectively, were significantly associated with poor OS in GC patients. And their expression increased with cancer advanced. Moreover, immune infiltration analysis displayed that those hub genes expression positively with M2 macrophage, CD8+ T Cell, most immune inhibitors, and majority immunostimulators. In summary, our results suggested that OGN, CHRDL2, C2orf40, THBS4, CHRDL1, and ANGPTL1 were all potential biomarkers for GC prognosis and might also be potential therapeutic targets for GC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12672-021-00434-5. Springer US 2021-10-16 /pmc/articles/PMC8777542/ /pubmed/35201473 http://dx.doi.org/10.1007/s12672-021-00434-5 Text en © The Author(s) 2021, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Yu, Xin Yu, Bin Fang, Weidan Xiong, Jianping Ma, Mei Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer |
title | Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer |
title_full | Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer |
title_fullStr | Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer |
title_full_unstemmed | Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer |
title_short | Identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer |
title_sort | identification hub genes of consensus molecular subtype correlation with immune infiltration and predict prognosis in gastric cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777542/ https://www.ncbi.nlm.nih.gov/pubmed/35201473 http://dx.doi.org/10.1007/s12672-021-00434-5 |
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