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Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi)

Naematelia aurantialba is a rare edible fungus with both nutritional and medicinal values and especially rich in bioactive polysaccharides. However, due to the lack of genomic information, researches on the mining of active compounds, artificial breeding and cultivation, genetics, and molecular biol...

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Autores principales: Sun, Tao, Zhang, Yixuan, Jiang, Hao, Yang, Kai, Wang, Shiyu, Wang, Rui, Li, Sha, Lei, Peng, Xu, Hong, Qiu, Yibin, Sun, Dafeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777972/
https://www.ncbi.nlm.nih.gov/pubmed/35049946
http://dx.doi.org/10.3390/jof8010006
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author Sun, Tao
Zhang, Yixuan
Jiang, Hao
Yang, Kai
Wang, Shiyu
Wang, Rui
Li, Sha
Lei, Peng
Xu, Hong
Qiu, Yibin
Sun, Dafeng
author_facet Sun, Tao
Zhang, Yixuan
Jiang, Hao
Yang, Kai
Wang, Shiyu
Wang, Rui
Li, Sha
Lei, Peng
Xu, Hong
Qiu, Yibin
Sun, Dafeng
author_sort Sun, Tao
collection PubMed
description Naematelia aurantialba is a rare edible fungus with both nutritional and medicinal values and especially rich in bioactive polysaccharides. However, due to the lack of genomic information, researches on the mining of active compounds, artificial breeding and cultivation, genetics, and molecular biology are limited. To facilitate the medicinal and food applications of N. aurantialba, we sequenced and analyzed the whole genome of N. aurantialba for the first time. The 21-Mb genome contained 15 contigs, and a total of 5860 protein-coding genes were predicted. The genome sequence shows that 296 genes are related to polysaccharide synthesis, including 15 genes related to nucleoside-activated sugar synthesis and 11 genes related to glucan synthesis. The genome also contains genes and gene clusters for the synthesis of other active substances, including terpenoids, unsaturated fatty acids, and bioactive proteins. In addition, it was also found that N. aurantialba was more closely related to Naematelia encephala than to Tremella fuciformis. In short, this study provides a reference for molecular cognition of N. aurantialba and related researches.
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spelling pubmed-87779722022-01-22 Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi) Sun, Tao Zhang, Yixuan Jiang, Hao Yang, Kai Wang, Shiyu Wang, Rui Li, Sha Lei, Peng Xu, Hong Qiu, Yibin Sun, Dafeng J Fungi (Basel) Article Naematelia aurantialba is a rare edible fungus with both nutritional and medicinal values and especially rich in bioactive polysaccharides. However, due to the lack of genomic information, researches on the mining of active compounds, artificial breeding and cultivation, genetics, and molecular biology are limited. To facilitate the medicinal and food applications of N. aurantialba, we sequenced and analyzed the whole genome of N. aurantialba for the first time. The 21-Mb genome contained 15 contigs, and a total of 5860 protein-coding genes were predicted. The genome sequence shows that 296 genes are related to polysaccharide synthesis, including 15 genes related to nucleoside-activated sugar synthesis and 11 genes related to glucan synthesis. The genome also contains genes and gene clusters for the synthesis of other active substances, including terpenoids, unsaturated fatty acids, and bioactive proteins. In addition, it was also found that N. aurantialba was more closely related to Naematelia encephala than to Tremella fuciformis. In short, this study provides a reference for molecular cognition of N. aurantialba and related researches. MDPI 2021-12-22 /pmc/articles/PMC8777972/ /pubmed/35049946 http://dx.doi.org/10.3390/jof8010006 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sun, Tao
Zhang, Yixuan
Jiang, Hao
Yang, Kai
Wang, Shiyu
Wang, Rui
Li, Sha
Lei, Peng
Xu, Hong
Qiu, Yibin
Sun, Dafeng
Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi)
title Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi)
title_full Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi)
title_fullStr Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi)
title_full_unstemmed Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi)
title_short Whole Genome Sequencing and Annotation of Naematelia aurantialba (Basidiomycota, Edible-Medicinal Fungi)
title_sort whole genome sequencing and annotation of naematelia aurantialba (basidiomycota, edible-medicinal fungi)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8777972/
https://www.ncbi.nlm.nih.gov/pubmed/35049946
http://dx.doi.org/10.3390/jof8010006
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