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Bispidine Platform as a Tool for Studying Amide Configuration Stability

In this work, the solution conformations of seventeen 3,7-diacyl bispidines were studied by means of NMR spectroscopy including VT NMR experiments. The acyl groups included alkyl, alkenyl, aryl, hetaryl, and ferrocene moieties. The presence of syn/anti-isomers and their ratios were estimated, and so...

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Autores principales: Krut’ko, Dmitry P., Medved’ko, Alexey V., Lyssenko, Konstantin A., Churakov, Andrei V., Dalinger, Alexander I., Kalinin, Mikhail A., Gudovannyy, Alexey O., Ponomarev, Konstantin Y., Suslov, Eugeny V., Vatsadze, Sergey Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8779339/
https://www.ncbi.nlm.nih.gov/pubmed/35056748
http://dx.doi.org/10.3390/molecules27020430
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author Krut’ko, Dmitry P.
Medved’ko, Alexey V.
Lyssenko, Konstantin A.
Churakov, Andrei V.
Dalinger, Alexander I.
Kalinin, Mikhail A.
Gudovannyy, Alexey O.
Ponomarev, Konstantin Y.
Suslov, Eugeny V.
Vatsadze, Sergey Z.
author_facet Krut’ko, Dmitry P.
Medved’ko, Alexey V.
Lyssenko, Konstantin A.
Churakov, Andrei V.
Dalinger, Alexander I.
Kalinin, Mikhail A.
Gudovannyy, Alexey O.
Ponomarev, Konstantin Y.
Suslov, Eugeny V.
Vatsadze, Sergey Z.
author_sort Krut’ko, Dmitry P.
collection PubMed
description In this work, the solution conformations of seventeen 3,7-diacyl bispidines were studied by means of NMR spectroscopy including VT NMR experiments. The acyl groups included alkyl, alkenyl, aryl, hetaryl, and ferrocene moieties. The presence of syn/anti-isomers and their ratios were estimated, and some reasons explaining experimental facts were formulated. In particular, all aliphatic and heterocyclic units in the acylic R(CO) fragments led to an increased content of the syn-form in DMSO-d(6) solutions. In contrast, only the anti-form was detected in DMSO-d(6) and CDCl(3) in the case when R = Ph, ferrocenyl, (R)-myrtenyl. In the case of a chiral compound derived from the natural terpene myrtene, a new dynamic process was found in addition to the expected inversion around the amide N-C(O) bond. Here, rotation around the CO-C=C bond in the acylic R fragment was detected, and its energy was estimated. For this compound, ΔG for amide N-C(O) inversion was found to be equal to 15.0 ± 0.2 kcal/mol, and for the rotation around the N(CO)–C(2′) bond, it was equal to 15.6 ± 0.3 kcal/mol. NMR analysis of the chiral bispidine-based bis-amide was conducted for the first time. Two X-ray structures are reported. For the first time, the unique syn-form was found in the crystal of an acyclic bispidine-based bis-amide. Quantum chemical calculations revealed the unexpected mechanism for amide bond inversion. It was found that the reaction does not proceed as direct N-C(O) bond inversion in the double-chair (CC) conformation but rather requires the conformational transformation into the chair–boat (CB) form first. The amide bond inversion in the latter requires less energy than in the CC form.
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spelling pubmed-87793392022-01-22 Bispidine Platform as a Tool for Studying Amide Configuration Stability Krut’ko, Dmitry P. Medved’ko, Alexey V. Lyssenko, Konstantin A. Churakov, Andrei V. Dalinger, Alexander I. Kalinin, Mikhail A. Gudovannyy, Alexey O. Ponomarev, Konstantin Y. Suslov, Eugeny V. Vatsadze, Sergey Z. Molecules Article In this work, the solution conformations of seventeen 3,7-diacyl bispidines were studied by means of NMR spectroscopy including VT NMR experiments. The acyl groups included alkyl, alkenyl, aryl, hetaryl, and ferrocene moieties. The presence of syn/anti-isomers and their ratios were estimated, and some reasons explaining experimental facts were formulated. In particular, all aliphatic and heterocyclic units in the acylic R(CO) fragments led to an increased content of the syn-form in DMSO-d(6) solutions. In contrast, only the anti-form was detected in DMSO-d(6) and CDCl(3) in the case when R = Ph, ferrocenyl, (R)-myrtenyl. In the case of a chiral compound derived from the natural terpene myrtene, a new dynamic process was found in addition to the expected inversion around the amide N-C(O) bond. Here, rotation around the CO-C=C bond in the acylic R fragment was detected, and its energy was estimated. For this compound, ΔG for amide N-C(O) inversion was found to be equal to 15.0 ± 0.2 kcal/mol, and for the rotation around the N(CO)–C(2′) bond, it was equal to 15.6 ± 0.3 kcal/mol. NMR analysis of the chiral bispidine-based bis-amide was conducted for the first time. Two X-ray structures are reported. For the first time, the unique syn-form was found in the crystal of an acyclic bispidine-based bis-amide. Quantum chemical calculations revealed the unexpected mechanism for amide bond inversion. It was found that the reaction does not proceed as direct N-C(O) bond inversion in the double-chair (CC) conformation but rather requires the conformational transformation into the chair–boat (CB) form first. The amide bond inversion in the latter requires less energy than in the CC form. MDPI 2022-01-10 /pmc/articles/PMC8779339/ /pubmed/35056748 http://dx.doi.org/10.3390/molecules27020430 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Krut’ko, Dmitry P.
Medved’ko, Alexey V.
Lyssenko, Konstantin A.
Churakov, Andrei V.
Dalinger, Alexander I.
Kalinin, Mikhail A.
Gudovannyy, Alexey O.
Ponomarev, Konstantin Y.
Suslov, Eugeny V.
Vatsadze, Sergey Z.
Bispidine Platform as a Tool for Studying Amide Configuration Stability
title Bispidine Platform as a Tool for Studying Amide Configuration Stability
title_full Bispidine Platform as a Tool for Studying Amide Configuration Stability
title_fullStr Bispidine Platform as a Tool for Studying Amide Configuration Stability
title_full_unstemmed Bispidine Platform as a Tool for Studying Amide Configuration Stability
title_short Bispidine Platform as a Tool for Studying Amide Configuration Stability
title_sort bispidine platform as a tool for studying amide configuration stability
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8779339/
https://www.ncbi.nlm.nih.gov/pubmed/35056748
http://dx.doi.org/10.3390/molecules27020430
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