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First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment

A topsoil sample obtained from a highly industrialized area (Taranto, Italy) was tested on the DR-CALUX(®) cell line and the exposed cells processed with proteomic and bioinformatics analyses. The presence of polyhalogenated compounds in the topsoil extracts was confirmed by GC-MS/MS analysis. Prote...

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Autores principales: Landi, Claudia, Liberatori, Giulia, Cotugno, Pietro, Sturba, Lucrezia, Vannuccini, Maria Luisa, Massari, Federica, Miniero, Daniela Valeria, Tursi, Angelo, Shaba, Enxhi, Behnisch, Peter A., Carleo, Alfonso, Di Giuseppe, Fabrizio, Angelucci, Stefania, Bini, Luca, Corsi, Ilaria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8779689/
https://www.ncbi.nlm.nih.gov/pubmed/35051051
http://dx.doi.org/10.3390/toxics10010009
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author Landi, Claudia
Liberatori, Giulia
Cotugno, Pietro
Sturba, Lucrezia
Vannuccini, Maria Luisa
Massari, Federica
Miniero, Daniela Valeria
Tursi, Angelo
Shaba, Enxhi
Behnisch, Peter A.
Carleo, Alfonso
Di Giuseppe, Fabrizio
Angelucci, Stefania
Bini, Luca
Corsi, Ilaria
author_facet Landi, Claudia
Liberatori, Giulia
Cotugno, Pietro
Sturba, Lucrezia
Vannuccini, Maria Luisa
Massari, Federica
Miniero, Daniela Valeria
Tursi, Angelo
Shaba, Enxhi
Behnisch, Peter A.
Carleo, Alfonso
Di Giuseppe, Fabrizio
Angelucci, Stefania
Bini, Luca
Corsi, Ilaria
author_sort Landi, Claudia
collection PubMed
description A topsoil sample obtained from a highly industrialized area (Taranto, Italy) was tested on the DR-CALUX(®) cell line and the exposed cells processed with proteomic and bioinformatics analyses. The presence of polyhalogenated compounds in the topsoil extracts was confirmed by GC-MS/MS analysis. Proteomic analysis of the cells exposed to the topsoil extracts identified 43 differential proteins. Enrichment analysis highlighted biological processes, such as the cellular response to a chemical stimulus, stress, and inorganic substances; regulation of translation; regulation of apoptotic process; and the response to organonitrogen compounds in light of particular drugs and compounds, extrapolated by bioinformatics all linked to the identified protein modifications. Our results confirm and reflect the complex epidemiological situation occurring among Taranto inhabitants and underline the need to further investigate the presence and sources of inferred chemicals in soils. The combination of bioassays and proteomics reveals a more complex scenario of chemicals able to affect cellular pathways and leading to toxicities rather than those identified by only bioassays and related chemical analysis. This combined approach turns out to be a promising tool for soil risk assessment and deserves further investigation and developments for soil monitoring and risk assessment.
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spelling pubmed-87796892022-01-22 First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment Landi, Claudia Liberatori, Giulia Cotugno, Pietro Sturba, Lucrezia Vannuccini, Maria Luisa Massari, Federica Miniero, Daniela Valeria Tursi, Angelo Shaba, Enxhi Behnisch, Peter A. Carleo, Alfonso Di Giuseppe, Fabrizio Angelucci, Stefania Bini, Luca Corsi, Ilaria Toxics Communication A topsoil sample obtained from a highly industrialized area (Taranto, Italy) was tested on the DR-CALUX(®) cell line and the exposed cells processed with proteomic and bioinformatics analyses. The presence of polyhalogenated compounds in the topsoil extracts was confirmed by GC-MS/MS analysis. Proteomic analysis of the cells exposed to the topsoil extracts identified 43 differential proteins. Enrichment analysis highlighted biological processes, such as the cellular response to a chemical stimulus, stress, and inorganic substances; regulation of translation; regulation of apoptotic process; and the response to organonitrogen compounds in light of particular drugs and compounds, extrapolated by bioinformatics all linked to the identified protein modifications. Our results confirm and reflect the complex epidemiological situation occurring among Taranto inhabitants and underline the need to further investigate the presence and sources of inferred chemicals in soils. The combination of bioassays and proteomics reveals a more complex scenario of chemicals able to affect cellular pathways and leading to toxicities rather than those identified by only bioassays and related chemical analysis. This combined approach turns out to be a promising tool for soil risk assessment and deserves further investigation and developments for soil monitoring and risk assessment. MDPI 2021-12-29 /pmc/articles/PMC8779689/ /pubmed/35051051 http://dx.doi.org/10.3390/toxics10010009 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Landi, Claudia
Liberatori, Giulia
Cotugno, Pietro
Sturba, Lucrezia
Vannuccini, Maria Luisa
Massari, Federica
Miniero, Daniela Valeria
Tursi, Angelo
Shaba, Enxhi
Behnisch, Peter A.
Carleo, Alfonso
Di Giuseppe, Fabrizio
Angelucci, Stefania
Bini, Luca
Corsi, Ilaria
First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment
title First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment
title_full First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment
title_fullStr First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment
title_full_unstemmed First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment
title_short First Attempt to Couple Proteomics with the AhR Reporter Gene Bioassay in Soil Pollution Monitoring and Assessment
title_sort first attempt to couple proteomics with the ahr reporter gene bioassay in soil pollution monitoring and assessment
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8779689/
https://www.ncbi.nlm.nih.gov/pubmed/35051051
http://dx.doi.org/10.3390/toxics10010009
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