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Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies

A typical metabolomic analysis consists of a multi-step procedure. Variation can be introduced in any analysis segment if proper care in quality assurance is not taken, thus compromising the final results. Sample stability is one of those factors. Although sophisticated studies addressing sample dec...

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Autores principales: Whitney, Kristin, Gracia-Gonzalez, Gerardo, Simsek, Senay
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8780833/
https://www.ncbi.nlm.nih.gov/pubmed/35050184
http://dx.doi.org/10.3390/metabo12010062
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author Whitney, Kristin
Gracia-Gonzalez, Gerardo
Simsek, Senay
author_facet Whitney, Kristin
Gracia-Gonzalez, Gerardo
Simsek, Senay
author_sort Whitney, Kristin
collection PubMed
description A typical metabolomic analysis consists of a multi-step procedure. Variation can be introduced in any analysis segment if proper care in quality assurance is not taken, thus compromising the final results. Sample stability is one of those factors. Although sophisticated studies addressing sample decay over time have been performed in the medical field, they are emerging in plant metabolomics. Here, we focus on the stability of wheat floret extracts on queue inside an auto-injector held at 25 °C. The objective was to locate an analytical time window from extraction to injection with no significant difference occurring in the sample. Total ion current chromatograms, principal component analysis, and volcano plots were used to measure changes in the samples. Results indicate a maximum work window time of 7:45 h for Steele-ND wheat methanolic extractions in an auto-sampler at 25 °C. Comparisons showed a significant gradual increase in the number and intensity of compounds observed that may be caused by the degradation of other molecules in the sample extract. The approach can be applied as preliminary work in a metabolite profiling study, helping to set the appropriate workload to produce confident results.
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spelling pubmed-87808332022-01-22 Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies Whitney, Kristin Gracia-Gonzalez, Gerardo Simsek, Senay Metabolites Article A typical metabolomic analysis consists of a multi-step procedure. Variation can be introduced in any analysis segment if proper care in quality assurance is not taken, thus compromising the final results. Sample stability is one of those factors. Although sophisticated studies addressing sample decay over time have been performed in the medical field, they are emerging in plant metabolomics. Here, we focus on the stability of wheat floret extracts on queue inside an auto-injector held at 25 °C. The objective was to locate an analytical time window from extraction to injection with no significant difference occurring in the sample. Total ion current chromatograms, principal component analysis, and volcano plots were used to measure changes in the samples. Results indicate a maximum work window time of 7:45 h for Steele-ND wheat methanolic extractions in an auto-sampler at 25 °C. Comparisons showed a significant gradual increase in the number and intensity of compounds observed that may be caused by the degradation of other molecules in the sample extract. The approach can be applied as preliminary work in a metabolite profiling study, helping to set the appropriate workload to produce confident results. MDPI 2022-01-11 /pmc/articles/PMC8780833/ /pubmed/35050184 http://dx.doi.org/10.3390/metabo12010062 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Whitney, Kristin
Gracia-Gonzalez, Gerardo
Simsek, Senay
Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies
title Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies
title_full Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies
title_fullStr Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies
title_full_unstemmed Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies
title_short Stability of Wheat Floret Metabolites during Untargeted Metabolomics Studies
title_sort stability of wheat floret metabolites during untargeted metabolomics studies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8780833/
https://www.ncbi.nlm.nih.gov/pubmed/35050184
http://dx.doi.org/10.3390/metabo12010062
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