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A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm

Accurate and early detection of anomalies in peripheral white blood cells plays a crucial role in the evaluation of well-being in individuals and the diagnosis and prognosis of hematologic diseases. For example, some blood disorders and immune system-related diseases are diagnosed by the differentia...

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Autores principales: Kouzehkanan, Zahra Mousavi, Saghari, Sepehr, Tavakoli, Sajad, Rostami, Peyman, Abaszadeh, Mohammadjavad, Mirzadeh, Farzaneh, Satlsar, Esmaeil Shahabi, Gheidishahran, Maryam, Gorgi, Fatemeh, Mohammadi, Saeed, Hosseini, Reshad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8782871/
https://www.ncbi.nlm.nih.gov/pubmed/35064165
http://dx.doi.org/10.1038/s41598-021-04426-x
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author Kouzehkanan, Zahra Mousavi
Saghari, Sepehr
Tavakoli, Sajad
Rostami, Peyman
Abaszadeh, Mohammadjavad
Mirzadeh, Farzaneh
Satlsar, Esmaeil Shahabi
Gheidishahran, Maryam
Gorgi, Fatemeh
Mohammadi, Saeed
Hosseini, Reshad
author_facet Kouzehkanan, Zahra Mousavi
Saghari, Sepehr
Tavakoli, Sajad
Rostami, Peyman
Abaszadeh, Mohammadjavad
Mirzadeh, Farzaneh
Satlsar, Esmaeil Shahabi
Gheidishahran, Maryam
Gorgi, Fatemeh
Mohammadi, Saeed
Hosseini, Reshad
author_sort Kouzehkanan, Zahra Mousavi
collection PubMed
description Accurate and early detection of anomalies in peripheral white blood cells plays a crucial role in the evaluation of well-being in individuals and the diagnosis and prognosis of hematologic diseases. For example, some blood disorders and immune system-related diseases are diagnosed by the differential count of white blood cells, which is one of the common laboratory tests. Data is one of the most important ingredients in the development and testing of many commercial and successful automatic or semi-automatic systems. To this end, this study introduces a free access dataset of normal peripheral white blood cells called Raabin-WBC containing about 40,000 images of white blood cells and color spots. For ensuring the validity of the data, a significant number of cells were labeled by two experts. Also, the ground truths of the nuclei and cytoplasm are extracted for 1145 selected cells. To provide the necessary diversity, various smears have been imaged, and two different cameras and two different microscopes were used. We did some preliminary deep learning experiments on Raabin-WBC to demonstrate how the generalization power of machine learning methods, especially deep neural networks, can be affected by the mentioned diversity. Raabin-WBC as a public data in the field of health can be used for the model development and testing in different machine learning tasks including classification, detection, segmentation, and localization.
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spelling pubmed-87828712022-01-24 A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm Kouzehkanan, Zahra Mousavi Saghari, Sepehr Tavakoli, Sajad Rostami, Peyman Abaszadeh, Mohammadjavad Mirzadeh, Farzaneh Satlsar, Esmaeil Shahabi Gheidishahran, Maryam Gorgi, Fatemeh Mohammadi, Saeed Hosseini, Reshad Sci Rep Article Accurate and early detection of anomalies in peripheral white blood cells plays a crucial role in the evaluation of well-being in individuals and the diagnosis and prognosis of hematologic diseases. For example, some blood disorders and immune system-related diseases are diagnosed by the differential count of white blood cells, which is one of the common laboratory tests. Data is one of the most important ingredients in the development and testing of many commercial and successful automatic or semi-automatic systems. To this end, this study introduces a free access dataset of normal peripheral white blood cells called Raabin-WBC containing about 40,000 images of white blood cells and color spots. For ensuring the validity of the data, a significant number of cells were labeled by two experts. Also, the ground truths of the nuclei and cytoplasm are extracted for 1145 selected cells. To provide the necessary diversity, various smears have been imaged, and two different cameras and two different microscopes were used. We did some preliminary deep learning experiments on Raabin-WBC to demonstrate how the generalization power of machine learning methods, especially deep neural networks, can be affected by the mentioned diversity. Raabin-WBC as a public data in the field of health can be used for the model development and testing in different machine learning tasks including classification, detection, segmentation, and localization. Nature Publishing Group UK 2022-01-21 /pmc/articles/PMC8782871/ /pubmed/35064165 http://dx.doi.org/10.1038/s41598-021-04426-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kouzehkanan, Zahra Mousavi
Saghari, Sepehr
Tavakoli, Sajad
Rostami, Peyman
Abaszadeh, Mohammadjavad
Mirzadeh, Farzaneh
Satlsar, Esmaeil Shahabi
Gheidishahran, Maryam
Gorgi, Fatemeh
Mohammadi, Saeed
Hosseini, Reshad
A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm
title A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm
title_full A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm
title_fullStr A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm
title_full_unstemmed A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm
title_short A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm
title_sort large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8782871/
https://www.ncbi.nlm.nih.gov/pubmed/35064165
http://dx.doi.org/10.1038/s41598-021-04426-x
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