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Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies

The immune microenvironment has profound impacts on the initiation and progression of colorectal cancer (CRC). Therefore, the goal of this article is to identify two robust immune subtypes in CRC, further provide novel insights for the underlying mechanisms and clinical management. In this study, tw...

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Autores principales: Liu, Zaoqu, Guo, Yaxin, Yang, Xiuxiu, Chen, Chen, Fan, Dandan, Wu, Xiaoke, Si, Chaohua, Xu, Yanxin, shao, Bo, Chen, Zhuang, Dang, Qin, Cui, Wenming, Han, Xinwei, Ji, Zhenyu, Sun, Zhenqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8784608/
https://www.ncbi.nlm.nih.gov/pubmed/35083217
http://dx.doi.org/10.3389/fcell.2021.784199
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author Liu, Zaoqu
Guo, Yaxin
Yang, Xiuxiu
Chen, Chen
Fan, Dandan
Wu, Xiaoke
Si, Chaohua
Xu, Yanxin
shao, Bo
Chen, Zhuang
Dang, Qin
Cui, Wenming
Han, Xinwei
Ji, Zhenyu
Sun, Zhenqiang
author_facet Liu, Zaoqu
Guo, Yaxin
Yang, Xiuxiu
Chen, Chen
Fan, Dandan
Wu, Xiaoke
Si, Chaohua
Xu, Yanxin
shao, Bo
Chen, Zhuang
Dang, Qin
Cui, Wenming
Han, Xinwei
Ji, Zhenyu
Sun, Zhenqiang
author_sort Liu, Zaoqu
collection PubMed
description The immune microenvironment has profound impacts on the initiation and progression of colorectal cancer (CRC). Therefore, the goal of this article is to identify two robust immune subtypes in CRC, further provide novel insights for the underlying mechanisms and clinical management. In this study, two CRC immune subtypes were identified using the consensus clustering of immune-related gene expression profiles in the meta-GEO dataset (n = 1,198), and their reproducibility was further verified in the TCGA-CRC dataset (n = 638). Subsequently, we characterized the immune escape mechanisms, gene alterations, and clinical features of two immune subtypes. Cluster 1 (C1) was defined as the “immune cold subtype” with immune cell depletion and deficiency, while cluster 2 (C2) was designed as the “immune hot subtype”, with abundant immune cell infiltration and matrix activation. We also underlined the potential immune escape mechanisms: lack of MHC molecules and defective tumor antigen presentation capacity in C1, increased immunosuppressive molecules in C2. The prognosis and sensitivity to 5-FU, Cisplatin and immunotherapy differed between two subtypes. According to the two immune subtypes, we developed a prognosis associated risk score (PARS) with the accurate performance for predicting the prognosis. Additionally, two nomograms for overall survival (OS) and disease-free survival (DFS) were further constructed to facilitate clinical management. Overall, our research provides new references and insights for understanding and refining the CRC.
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spelling pubmed-87846082022-01-25 Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies Liu, Zaoqu Guo, Yaxin Yang, Xiuxiu Chen, Chen Fan, Dandan Wu, Xiaoke Si, Chaohua Xu, Yanxin shao, Bo Chen, Zhuang Dang, Qin Cui, Wenming Han, Xinwei Ji, Zhenyu Sun, Zhenqiang Front Cell Dev Biol Cell and Developmental Biology The immune microenvironment has profound impacts on the initiation and progression of colorectal cancer (CRC). Therefore, the goal of this article is to identify two robust immune subtypes in CRC, further provide novel insights for the underlying mechanisms and clinical management. In this study, two CRC immune subtypes were identified using the consensus clustering of immune-related gene expression profiles in the meta-GEO dataset (n = 1,198), and their reproducibility was further verified in the TCGA-CRC dataset (n = 638). Subsequently, we characterized the immune escape mechanisms, gene alterations, and clinical features of two immune subtypes. Cluster 1 (C1) was defined as the “immune cold subtype” with immune cell depletion and deficiency, while cluster 2 (C2) was designed as the “immune hot subtype”, with abundant immune cell infiltration and matrix activation. We also underlined the potential immune escape mechanisms: lack of MHC molecules and defective tumor antigen presentation capacity in C1, increased immunosuppressive molecules in C2. The prognosis and sensitivity to 5-FU, Cisplatin and immunotherapy differed between two subtypes. According to the two immune subtypes, we developed a prognosis associated risk score (PARS) with the accurate performance for predicting the prognosis. Additionally, two nomograms for overall survival (OS) and disease-free survival (DFS) were further constructed to facilitate clinical management. Overall, our research provides new references and insights for understanding and refining the CRC. Frontiers Media S.A. 2022-01-10 /pmc/articles/PMC8784608/ /pubmed/35083217 http://dx.doi.org/10.3389/fcell.2021.784199 Text en Copyright © 2022 Liu, Guo, Yang, Chen, Fan, Wu, Si, Xu, shao, Chen, Dang, Cui, Han, Ji and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Liu, Zaoqu
Guo, Yaxin
Yang, Xiuxiu
Chen, Chen
Fan, Dandan
Wu, Xiaoke
Si, Chaohua
Xu, Yanxin
shao, Bo
Chen, Zhuang
Dang, Qin
Cui, Wenming
Han, Xinwei
Ji, Zhenyu
Sun, Zhenqiang
Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
title Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
title_full Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
title_fullStr Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
title_full_unstemmed Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
title_short Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
title_sort immune landscape refines the classification of colorectal cancer with heterogeneous prognosis, tumor microenvironment and distinct sensitivity to frontline therapies
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8784608/
https://www.ncbi.nlm.nih.gov/pubmed/35083217
http://dx.doi.org/10.3389/fcell.2021.784199
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