Cargando…
Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies
The immune microenvironment has profound impacts on the initiation and progression of colorectal cancer (CRC). Therefore, the goal of this article is to identify two robust immune subtypes in CRC, further provide novel insights for the underlying mechanisms and clinical management. In this study, tw...
Autores principales: | , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8784608/ https://www.ncbi.nlm.nih.gov/pubmed/35083217 http://dx.doi.org/10.3389/fcell.2021.784199 |
_version_ | 1784638778267140096 |
---|---|
author | Liu, Zaoqu Guo, Yaxin Yang, Xiuxiu Chen, Chen Fan, Dandan Wu, Xiaoke Si, Chaohua Xu, Yanxin shao, Bo Chen, Zhuang Dang, Qin Cui, Wenming Han, Xinwei Ji, Zhenyu Sun, Zhenqiang |
author_facet | Liu, Zaoqu Guo, Yaxin Yang, Xiuxiu Chen, Chen Fan, Dandan Wu, Xiaoke Si, Chaohua Xu, Yanxin shao, Bo Chen, Zhuang Dang, Qin Cui, Wenming Han, Xinwei Ji, Zhenyu Sun, Zhenqiang |
author_sort | Liu, Zaoqu |
collection | PubMed |
description | The immune microenvironment has profound impacts on the initiation and progression of colorectal cancer (CRC). Therefore, the goal of this article is to identify two robust immune subtypes in CRC, further provide novel insights for the underlying mechanisms and clinical management. In this study, two CRC immune subtypes were identified using the consensus clustering of immune-related gene expression profiles in the meta-GEO dataset (n = 1,198), and their reproducibility was further verified in the TCGA-CRC dataset (n = 638). Subsequently, we characterized the immune escape mechanisms, gene alterations, and clinical features of two immune subtypes. Cluster 1 (C1) was defined as the “immune cold subtype” with immune cell depletion and deficiency, while cluster 2 (C2) was designed as the “immune hot subtype”, with abundant immune cell infiltration and matrix activation. We also underlined the potential immune escape mechanisms: lack of MHC molecules and defective tumor antigen presentation capacity in C1, increased immunosuppressive molecules in C2. The prognosis and sensitivity to 5-FU, Cisplatin and immunotherapy differed between two subtypes. According to the two immune subtypes, we developed a prognosis associated risk score (PARS) with the accurate performance for predicting the prognosis. Additionally, two nomograms for overall survival (OS) and disease-free survival (DFS) were further constructed to facilitate clinical management. Overall, our research provides new references and insights for understanding and refining the CRC. |
format | Online Article Text |
id | pubmed-8784608 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87846082022-01-25 Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies Liu, Zaoqu Guo, Yaxin Yang, Xiuxiu Chen, Chen Fan, Dandan Wu, Xiaoke Si, Chaohua Xu, Yanxin shao, Bo Chen, Zhuang Dang, Qin Cui, Wenming Han, Xinwei Ji, Zhenyu Sun, Zhenqiang Front Cell Dev Biol Cell and Developmental Biology The immune microenvironment has profound impacts on the initiation and progression of colorectal cancer (CRC). Therefore, the goal of this article is to identify two robust immune subtypes in CRC, further provide novel insights for the underlying mechanisms and clinical management. In this study, two CRC immune subtypes were identified using the consensus clustering of immune-related gene expression profiles in the meta-GEO dataset (n = 1,198), and their reproducibility was further verified in the TCGA-CRC dataset (n = 638). Subsequently, we characterized the immune escape mechanisms, gene alterations, and clinical features of two immune subtypes. Cluster 1 (C1) was defined as the “immune cold subtype” with immune cell depletion and deficiency, while cluster 2 (C2) was designed as the “immune hot subtype”, with abundant immune cell infiltration and matrix activation. We also underlined the potential immune escape mechanisms: lack of MHC molecules and defective tumor antigen presentation capacity in C1, increased immunosuppressive molecules in C2. The prognosis and sensitivity to 5-FU, Cisplatin and immunotherapy differed between two subtypes. According to the two immune subtypes, we developed a prognosis associated risk score (PARS) with the accurate performance for predicting the prognosis. Additionally, two nomograms for overall survival (OS) and disease-free survival (DFS) were further constructed to facilitate clinical management. Overall, our research provides new references and insights for understanding and refining the CRC. Frontiers Media S.A. 2022-01-10 /pmc/articles/PMC8784608/ /pubmed/35083217 http://dx.doi.org/10.3389/fcell.2021.784199 Text en Copyright © 2022 Liu, Guo, Yang, Chen, Fan, Wu, Si, Xu, shao, Chen, Dang, Cui, Han, Ji and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Liu, Zaoqu Guo, Yaxin Yang, Xiuxiu Chen, Chen Fan, Dandan Wu, Xiaoke Si, Chaohua Xu, Yanxin shao, Bo Chen, Zhuang Dang, Qin Cui, Wenming Han, Xinwei Ji, Zhenyu Sun, Zhenqiang Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies |
title | Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies |
title_full | Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies |
title_fullStr | Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies |
title_full_unstemmed | Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies |
title_short | Immune Landscape Refines the Classification of Colorectal Cancer With Heterogeneous Prognosis, Tumor Microenvironment and Distinct Sensitivity to Frontline Therapies |
title_sort | immune landscape refines the classification of colorectal cancer with heterogeneous prognosis, tumor microenvironment and distinct sensitivity to frontline therapies |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8784608/ https://www.ncbi.nlm.nih.gov/pubmed/35083217 http://dx.doi.org/10.3389/fcell.2021.784199 |
work_keys_str_mv | AT liuzaoqu immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT guoyaxin immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT yangxiuxiu immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT chenchen immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT fandandan immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT wuxiaoke immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT sichaohua immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT xuyanxin immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT shaobo immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT chenzhuang immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT dangqin immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT cuiwenming immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT hanxinwei immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT jizhenyu immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies AT sunzhenqiang immunelandscaperefinestheclassificationofcolorectalcancerwithheterogeneousprognosistumormicroenvironmentanddistinctsensitivitytofrontlinetherapies |