Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica

Heterorhabditis indica is one of the most widely used entomopathogenic nematodes for the biological control of agricultural insect pests worldwide. The draft genome of H. indica was sequenced using three genomic libraries of 300 bp, 600 bp and 5 kb sizes by Illumina HiSeq platform. The size of the d...

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Autores principales: Bhat, Chaitra G., Somvanshi, Vishal S., Budhwar, Roli, Godwin, Jeffrey, Rao, Uma
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Exeley Inc. 2022
Materias:
Life Sciences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8784978/
https://www.ncbi.nlm.nih.gov/pubmed/35174333
http://dx.doi.org/10.21307/jofnem-2021-101
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author Bhat, Chaitra G.
Somvanshi, Vishal S.
Budhwar, Roli
Godwin, Jeffrey
Rao, Uma
author_facet Bhat, Chaitra G.
Somvanshi, Vishal S.
Budhwar, Roli
Godwin, Jeffrey
Rao, Uma
author_sort Bhat, Chaitra G.
collection PubMed
description Heterorhabditis indica is one of the most widely used entomopathogenic nematodes for the biological control of agricultural insect pests worldwide. The draft genome of H. indica was sequenced using three genomic libraries of 300 bp, 600 bp and 5 kb sizes by Illumina HiSeq platform. The size of the draft genome assembly was 91.26 Mb, comprising 3,538 scaffolds. Genome completeness analysis by BUSCO (Benchmarking Universal Single-Copy Orthologs) showed 84% complete, and 6.5% fragmented BUSCOs. Further, 10,494 protein-coding genes were predicted. The H. indica draft genome will enable comparative and functional genomic studies in Heterorhabditis nematodes.
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spelling pubmed-87849782022-02-15 Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica Bhat, Chaitra G. Somvanshi, Vishal S. Budhwar, Roli Godwin, Jeffrey Rao, Uma J Nematol Life Sciences Heterorhabditis indica is one of the most widely used entomopathogenic nematodes for the biological control of agricultural insect pests worldwide. The draft genome of H. indica was sequenced using three genomic libraries of 300 bp, 600 bp and 5 kb sizes by Illumina HiSeq platform. The size of the draft genome assembly was 91.26 Mb, comprising 3,538 scaffolds. Genome completeness analysis by BUSCO (Benchmarking Universal Single-Copy Orthologs) showed 84% complete, and 6.5% fragmented BUSCOs. Further, 10,494 protein-coding genes were predicted. The H. indica draft genome will enable comparative and functional genomic studies in Heterorhabditis nematodes. Exeley Inc. 2022-01-21 /pmc/articles/PMC8784978/ /pubmed/35174333 http://dx.doi.org/10.21307/jofnem-2021-101 Text en © 2021 Authors https://creativecommons.org/licenses/by/4.0/This is an Open Access article licensed under the Creative Commons CC BY 4.0 license, https://creativecommons.org/licenses/by/4.0/
spellingShingle Life Sciences
Bhat, Chaitra G.
Somvanshi, Vishal S.
Budhwar, Roli
Godwin, Jeffrey
Rao, Uma
Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica
title Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica
title_full Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica
title_fullStr Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica
title_full_unstemmed Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica
title_short Nematode genome announcement: The draft genome sequence of entomopathogenic nematode Heterorhabditis indica
title_sort nematode genome announcement: the draft genome sequence of entomopathogenic nematode heterorhabditis indica
topic Life Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8784978/
https://www.ncbi.nlm.nih.gov/pubmed/35174333
http://dx.doi.org/10.21307/jofnem-2021-101
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