Cargando…

Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics

BACKGROUND: Testicular cancer severely affects male health, so finding effective diagnosis and prognostic indicators and exploring its pathogenesis are very important. PURPOSE: This study aims to explore the hub genes that play important roles in the occurrence and development of testicular germ cel...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Chunlei, Zhang, Weijun, Cui, Han, Zhang, Bin, Miao, Pengcheng, Yang, Qi, Bai, Mei, Jiao, Hongmei, Chang, Dehui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8785138/
https://www.ncbi.nlm.nih.gov/pubmed/35082515
http://dx.doi.org/10.2147/IJGM.S342611
_version_ 1784638899540197376
author Zhang, Chunlei
Zhang, Weijun
Cui, Han
Zhang, Bin
Miao, Pengcheng
Yang, Qi
Bai, Mei
Jiao, Hongmei
Chang, Dehui
author_facet Zhang, Chunlei
Zhang, Weijun
Cui, Han
Zhang, Bin
Miao, Pengcheng
Yang, Qi
Bai, Mei
Jiao, Hongmei
Chang, Dehui
author_sort Zhang, Chunlei
collection PubMed
description BACKGROUND: Testicular cancer severely affects male health, so finding effective diagnosis and prognostic indicators and exploring its pathogenesis are very important. PURPOSE: This study aims to explore the hub genes that play important roles in the occurrence and development of testicular germ cell tumor (TGCT). METHODS: Data were obtained from Gene Expression Omnibus datasets (GSE3218 and GSE1818) and verified in The Cancer Genome Atlas database and the Genotype-Tissue Expression database and the Human Protein Atlas database. A protein–protein interaction network was constructed to obtain hub genes. GEO2R, R software and packages were used to analyze differentially expressed genes (DEGs), receiver operating characteristic curve assessment, Cox regression analysis, Kaplan–Meier survival curve assessment, Gene Ontology analysis, Kyoto Encyclopedia of Genes and Genomes analysis, the relationship with clinicopathological information, gene set enrichment analysis, the correlation with immune cells’ infiltration, and the expression in pan-cancers of the hub genes. RESULTS: PLK4, TRIP13, TPR, KIF18A, CDKN3, HMMR, PBK, PTTG1, CKS2, SYCP1, HSPA2, and MKI67 were selected as the hub genes. mRNA of PLK4, TRIP13, CDKN3, SYCP1, HSPA2, and MKI67 had high diagnostic values, and higher expression of CDKN3 and HSPA2 mRNA were poor prognostic factors for progression-free interval of TGCT. The hub genes involved organelle division and cell cycle, chromosome and centromeric region, heat shock protein binding, and more. Downregulated TPR and PLK4 were selected as research targets for continued study, and they may participate in multiple signaling pathways. The expression of TPR and PLK4 correlated with the infiltration of a variety of immune cells and differed in pan-cancers. CONCLUSION: The mRNA levels of multiple hub genes have high diagnostic and prognostic values for TGCT. TPR and PLK4 may play a role in the occurrence and development of TGCT through cancer-related signaling pathways.
format Online
Article
Text
id pubmed-8785138
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Dove
record_format MEDLINE/PubMed
spelling pubmed-87851382022-01-25 Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics Zhang, Chunlei Zhang, Weijun Cui, Han Zhang, Bin Miao, Pengcheng Yang, Qi Bai, Mei Jiao, Hongmei Chang, Dehui Int J Gen Med Original Research BACKGROUND: Testicular cancer severely affects male health, so finding effective diagnosis and prognostic indicators and exploring its pathogenesis are very important. PURPOSE: This study aims to explore the hub genes that play important roles in the occurrence and development of testicular germ cell tumor (TGCT). METHODS: Data were obtained from Gene Expression Omnibus datasets (GSE3218 and GSE1818) and verified in The Cancer Genome Atlas database and the Genotype-Tissue Expression database and the Human Protein Atlas database. A protein–protein interaction network was constructed to obtain hub genes. GEO2R, R software and packages were used to analyze differentially expressed genes (DEGs), receiver operating characteristic curve assessment, Cox regression analysis, Kaplan–Meier survival curve assessment, Gene Ontology analysis, Kyoto Encyclopedia of Genes and Genomes analysis, the relationship with clinicopathological information, gene set enrichment analysis, the correlation with immune cells’ infiltration, and the expression in pan-cancers of the hub genes. RESULTS: PLK4, TRIP13, TPR, KIF18A, CDKN3, HMMR, PBK, PTTG1, CKS2, SYCP1, HSPA2, and MKI67 were selected as the hub genes. mRNA of PLK4, TRIP13, CDKN3, SYCP1, HSPA2, and MKI67 had high diagnostic values, and higher expression of CDKN3 and HSPA2 mRNA were poor prognostic factors for progression-free interval of TGCT. The hub genes involved organelle division and cell cycle, chromosome and centromeric region, heat shock protein binding, and more. Downregulated TPR and PLK4 were selected as research targets for continued study, and they may participate in multiple signaling pathways. The expression of TPR and PLK4 correlated with the infiltration of a variety of immune cells and differed in pan-cancers. CONCLUSION: The mRNA levels of multiple hub genes have high diagnostic and prognostic values for TGCT. TPR and PLK4 may play a role in the occurrence and development of TGCT through cancer-related signaling pathways. Dove 2022-01-18 /pmc/articles/PMC8785138/ /pubmed/35082515 http://dx.doi.org/10.2147/IJGM.S342611 Text en © 2022 Zhang et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Zhang, Chunlei
Zhang, Weijun
Cui, Han
Zhang, Bin
Miao, Pengcheng
Yang, Qi
Bai, Mei
Jiao, Hongmei
Chang, Dehui
Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics
title Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics
title_full Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics
title_fullStr Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics
title_full_unstemmed Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics
title_short Role of Hub Genes in the Occurrence and Development of Testicular Cancer Based on Bioinformatics
title_sort role of hub genes in the occurrence and development of testicular cancer based on bioinformatics
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8785138/
https://www.ncbi.nlm.nih.gov/pubmed/35082515
http://dx.doi.org/10.2147/IJGM.S342611
work_keys_str_mv AT zhangchunlei roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT zhangweijun roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT cuihan roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT zhangbin roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT miaopengcheng roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT yangqi roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT baimei roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT jiaohongmei roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics
AT changdehui roleofhubgenesintheoccurrenceanddevelopmentoftesticularcancerbasedonbioinformatics