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Deep learning increases the availability of organism photographs taken by citizens in citizen science programs
Citizen science programs using organism photographs have become popular, but there are two problems related to photographs. One problem is the low quality of photographs. It is laborious to identify species in photographs taken outdoors because they are out of focus, partially invisible, or under di...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8786926/ https://www.ncbi.nlm.nih.gov/pubmed/35075168 http://dx.doi.org/10.1038/s41598-022-05163-5 |
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author | Suzuki-Ohno, Yukari Westfechtel, Thomas Yokoyama, Jun Ohno, Kazunori Nakashizuka, Tohru Kawata, Masakado Okatani, Takayuki |
author_facet | Suzuki-Ohno, Yukari Westfechtel, Thomas Yokoyama, Jun Ohno, Kazunori Nakashizuka, Tohru Kawata, Masakado Okatani, Takayuki |
author_sort | Suzuki-Ohno, Yukari |
collection | PubMed |
description | Citizen science programs using organism photographs have become popular, but there are two problems related to photographs. One problem is the low quality of photographs. It is laborious to identify species in photographs taken outdoors because they are out of focus, partially invisible, or under different lighting conditions. The other is difficulty for non-experts to identify species. Organisms usually have interspecific similarity and intraspecific variation, which hinder species identification by non-experts. Deep learning solves these problems and increases the availability of organism photographs. We trained a deep convolutional neural network, Xception, to identify bee species using various quality of bee photographs that were taken by citizens. These bees belonged to two honey bee species and 10 bumble bee species with interspecific similarity and intraspecific variation. We investigated the accuracy of species identification by biologists and deep learning. The accuracy of species identification by Xception (83.4%) was much higher than that of biologists (53.7%). When we grouped bee photographs by different colors resulting from intraspecific variation in addition to species, the accuracy of species identification by Xception increased to 84.7%. The collaboration with deep learning and experts will increase the reliability of species identification and their use for scientific researches. |
format | Online Article Text |
id | pubmed-8786926 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-87869262022-01-25 Deep learning increases the availability of organism photographs taken by citizens in citizen science programs Suzuki-Ohno, Yukari Westfechtel, Thomas Yokoyama, Jun Ohno, Kazunori Nakashizuka, Tohru Kawata, Masakado Okatani, Takayuki Sci Rep Article Citizen science programs using organism photographs have become popular, but there are two problems related to photographs. One problem is the low quality of photographs. It is laborious to identify species in photographs taken outdoors because they are out of focus, partially invisible, or under different lighting conditions. The other is difficulty for non-experts to identify species. Organisms usually have interspecific similarity and intraspecific variation, which hinder species identification by non-experts. Deep learning solves these problems and increases the availability of organism photographs. We trained a deep convolutional neural network, Xception, to identify bee species using various quality of bee photographs that were taken by citizens. These bees belonged to two honey bee species and 10 bumble bee species with interspecific similarity and intraspecific variation. We investigated the accuracy of species identification by biologists and deep learning. The accuracy of species identification by Xception (83.4%) was much higher than that of biologists (53.7%). When we grouped bee photographs by different colors resulting from intraspecific variation in addition to species, the accuracy of species identification by Xception increased to 84.7%. The collaboration with deep learning and experts will increase the reliability of species identification and their use for scientific researches. Nature Publishing Group UK 2022-01-24 /pmc/articles/PMC8786926/ /pubmed/35075168 http://dx.doi.org/10.1038/s41598-022-05163-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Suzuki-Ohno, Yukari Westfechtel, Thomas Yokoyama, Jun Ohno, Kazunori Nakashizuka, Tohru Kawata, Masakado Okatani, Takayuki Deep learning increases the availability of organism photographs taken by citizens in citizen science programs |
title | Deep learning increases the availability of organism photographs taken by citizens in citizen science programs |
title_full | Deep learning increases the availability of organism photographs taken by citizens in citizen science programs |
title_fullStr | Deep learning increases the availability of organism photographs taken by citizens in citizen science programs |
title_full_unstemmed | Deep learning increases the availability of organism photographs taken by citizens in citizen science programs |
title_short | Deep learning increases the availability of organism photographs taken by citizens in citizen science programs |
title_sort | deep learning increases the availability of organism photographs taken by citizens in citizen science programs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8786926/ https://www.ncbi.nlm.nih.gov/pubmed/35075168 http://dx.doi.org/10.1038/s41598-022-05163-5 |
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