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Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT

BACKGROUND: To train a machine-learning model to locate the transition zone (TZ) of adhesion-related small bowel obstruction (SBO) on CT scans. MATERIALS AND METHODS: We used 562 CTs performed in 2005–2018 in 404 patients with adhesion-related SBO. Annotation of the TZs was performed by experienced...

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Autores principales: Vanderbecq, Quentin, Ardon, Roberto, De Reviers, Antoine, Ruppli, Camille, Dallongeville, Axel, Boulay-Coletta, Isabelle, D’Assignies, Gaspard, Zins, Marc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8787000/
https://www.ncbi.nlm.nih.gov/pubmed/35072813
http://dx.doi.org/10.1186/s13244-021-01150-y
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author Vanderbecq, Quentin
Ardon, Roberto
De Reviers, Antoine
Ruppli, Camille
Dallongeville, Axel
Boulay-Coletta, Isabelle
D’Assignies, Gaspard
Zins, Marc
author_facet Vanderbecq, Quentin
Ardon, Roberto
De Reviers, Antoine
Ruppli, Camille
Dallongeville, Axel
Boulay-Coletta, Isabelle
D’Assignies, Gaspard
Zins, Marc
author_sort Vanderbecq, Quentin
collection PubMed
description BACKGROUND: To train a machine-learning model to locate the transition zone (TZ) of adhesion-related small bowel obstruction (SBO) on CT scans. MATERIALS AND METHODS: We used 562 CTs performed in 2005–2018 in 404 patients with adhesion-related SBO. Annotation of the TZs was performed by experienced radiologists and trained residents using bounding boxes. Preprocessing involved using a pretrained model to extract the abdominopelvic region. We modeled TZ localization as a binary classification problem by splitting the abdominopelvic region into 125 patches. We then trained a neural network model to classify each patch as containing or not containing a TZ. We coupled this with a trained probabilistic estimation of presence of a TZ in each patch. The models were first evaluated by computing the area under the receiver operating characteristics curve (AUROC). Then, to assess the clinical benefit, we measured the proportion of total abdominopelvic volume classified as containing a TZ for several different false-negative rates. RESULTS: The probability of containing a TZ was highest for the hypogastric region (56.9%). The coupled classification network and probability mapping produced an AUROC of 0.93. For a 15% proportion of volume classified as containing TZs, the probability of highlighted patches containing a TZ was 92%. CONCLUSION: Modeling TZ localization by coupling convolutional neural network classification and probabilistic localization estimation shows the way to a possible automatic TZ detection, a complex radiological task with a major clinical impact. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-021-01150-y.
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spelling pubmed-87870002022-02-02 Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT Vanderbecq, Quentin Ardon, Roberto De Reviers, Antoine Ruppli, Camille Dallongeville, Axel Boulay-Coletta, Isabelle D’Assignies, Gaspard Zins, Marc Insights Imaging Original Article BACKGROUND: To train a machine-learning model to locate the transition zone (TZ) of adhesion-related small bowel obstruction (SBO) on CT scans. MATERIALS AND METHODS: We used 562 CTs performed in 2005–2018 in 404 patients with adhesion-related SBO. Annotation of the TZs was performed by experienced radiologists and trained residents using bounding boxes. Preprocessing involved using a pretrained model to extract the abdominopelvic region. We modeled TZ localization as a binary classification problem by splitting the abdominopelvic region into 125 patches. We then trained a neural network model to classify each patch as containing or not containing a TZ. We coupled this with a trained probabilistic estimation of presence of a TZ in each patch. The models were first evaluated by computing the area under the receiver operating characteristics curve (AUROC). Then, to assess the clinical benefit, we measured the proportion of total abdominopelvic volume classified as containing a TZ for several different false-negative rates. RESULTS: The probability of containing a TZ was highest for the hypogastric region (56.9%). The coupled classification network and probability mapping produced an AUROC of 0.93. For a 15% proportion of volume classified as containing TZs, the probability of highlighted patches containing a TZ was 92%. CONCLUSION: Modeling TZ localization by coupling convolutional neural network classification and probabilistic localization estimation shows the way to a possible automatic TZ detection, a complex radiological task with a major clinical impact. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-021-01150-y. Springer International Publishing 2022-01-24 /pmc/articles/PMC8787000/ /pubmed/35072813 http://dx.doi.org/10.1186/s13244-021-01150-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Vanderbecq, Quentin
Ardon, Roberto
De Reviers, Antoine
Ruppli, Camille
Dallongeville, Axel
Boulay-Coletta, Isabelle
D’Assignies, Gaspard
Zins, Marc
Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT
title Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT
title_full Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT
title_fullStr Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT
title_full_unstemmed Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT
title_short Adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by CT
title_sort adhesion-related small bowel obstruction: deep learning for automatic transition-zone detection by ct
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8787000/
https://www.ncbi.nlm.nih.gov/pubmed/35072813
http://dx.doi.org/10.1186/s13244-021-01150-y
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