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Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis
PURPOSE: Identifying and monitoring visual field (VF) defects due to optic neuritis (ON) relies on qualitative clinician interpretation. Archetypal analysis (AA), a form of unsupervised machine learning, is used to quantify VF defects in glaucoma. We hypothesized that AA can identify quantifiable, O...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Association for Research in Vision and Ophthalmology
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8787544/ https://www.ncbi.nlm.nih.gov/pubmed/35044445 http://dx.doi.org/10.1167/tvst.11.1.27 |
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author | Solli, Elena Doshi, Hiten Elze, Tobias Pasquale, Louis Wall, Michael Kupersmith, Mark |
author_facet | Solli, Elena Doshi, Hiten Elze, Tobias Pasquale, Louis Wall, Michael Kupersmith, Mark |
author_sort | Solli, Elena |
collection | PubMed |
description | PURPOSE: Identifying and monitoring visual field (VF) defects due to optic neuritis (ON) relies on qualitative clinician interpretation. Archetypal analysis (AA), a form of unsupervised machine learning, is used to quantify VF defects in glaucoma. We hypothesized that AA can identify quantifiable, ON-specific patterns (as archetypes [ATs]) of VF loss that resemble known ON VF defects. METHODS: We applied AA to a dataset of 3892 VFs prospectively collected from 456 eyes in the Optic Neuritis Treatment Trial (ONTT), and decomposed each VF into component ATs (total weight = 100%). AA of 568 VFs from 61 control eyes was used to define a minimum meaningful (≤7%) AT weight and weight change. We correlated baseline ON AT weights with global VF indices, visual acuity, and contrast sensitivity. For eyes with a dominant AT (weight ≥50%), we compared the ONTT VF classification with the AT pattern. RESULTS: AA generated a set of 16 ATs containing patterns seen in the ONTT. These were distinct from control ATs. Baseline study eye VFs were decomposed into 2.9 ± 1.5 ATs. AT2, a global dysfunction pattern, had the highest mean weight at baseline (36%; 95% confidence interval, 33%–40%), and showed the strongest correlation with MD (r = −0.91; P < 0.001), visual acuity (r = 0.70; P < 0.001), and contrast sensitivity (r = −0.77; P < 0.001). Of 191 baseline VFs with a dominant AT, 81% matched the descriptive classifications. CONCLUSIONS: AA identifies and quantifies archetypal, ON-specific patterns of VF loss. TRANSLATIONAL RELEVANCE: AA is a quantitative, objective method for demonstrating and monitoring change in regional VF deficits in ON. |
format | Online Article Text |
id | pubmed-8787544 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Association for Research in Vision and Ophthalmology |
record_format | MEDLINE/PubMed |
spelling | pubmed-87875442022-01-26 Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis Solli, Elena Doshi, Hiten Elze, Tobias Pasquale, Louis Wall, Michael Kupersmith, Mark Transl Vis Sci Technol Article PURPOSE: Identifying and monitoring visual field (VF) defects due to optic neuritis (ON) relies on qualitative clinician interpretation. Archetypal analysis (AA), a form of unsupervised machine learning, is used to quantify VF defects in glaucoma. We hypothesized that AA can identify quantifiable, ON-specific patterns (as archetypes [ATs]) of VF loss that resemble known ON VF defects. METHODS: We applied AA to a dataset of 3892 VFs prospectively collected from 456 eyes in the Optic Neuritis Treatment Trial (ONTT), and decomposed each VF into component ATs (total weight = 100%). AA of 568 VFs from 61 control eyes was used to define a minimum meaningful (≤7%) AT weight and weight change. We correlated baseline ON AT weights with global VF indices, visual acuity, and contrast sensitivity. For eyes with a dominant AT (weight ≥50%), we compared the ONTT VF classification with the AT pattern. RESULTS: AA generated a set of 16 ATs containing patterns seen in the ONTT. These were distinct from control ATs. Baseline study eye VFs were decomposed into 2.9 ± 1.5 ATs. AT2, a global dysfunction pattern, had the highest mean weight at baseline (36%; 95% confidence interval, 33%–40%), and showed the strongest correlation with MD (r = −0.91; P < 0.001), visual acuity (r = 0.70; P < 0.001), and contrast sensitivity (r = −0.77; P < 0.001). Of 191 baseline VFs with a dominant AT, 81% matched the descriptive classifications. CONCLUSIONS: AA identifies and quantifies archetypal, ON-specific patterns of VF loss. TRANSLATIONAL RELEVANCE: AA is a quantitative, objective method for demonstrating and monitoring change in regional VF deficits in ON. The Association for Research in Vision and Ophthalmology 2022-01-19 /pmc/articles/PMC8787544/ /pubmed/35044445 http://dx.doi.org/10.1167/tvst.11.1.27 Text en Copyright 2022 The Authors https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License. |
spellingShingle | Article Solli, Elena Doshi, Hiten Elze, Tobias Pasquale, Louis Wall, Michael Kupersmith, Mark Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis |
title | Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis |
title_full | Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis |
title_fullStr | Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis |
title_full_unstemmed | Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis |
title_short | Archetypal Analysis Reveals Quantifiable Patterns of Visual Field Loss in Optic Neuritis |
title_sort | archetypal analysis reveals quantifiable patterns of visual field loss in optic neuritis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8787544/ https://www.ncbi.nlm.nih.gov/pubmed/35044445 http://dx.doi.org/10.1167/tvst.11.1.27 |
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