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The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley
Tetradium daniellii (Benn.) T. G. Hartley is an important medicinal, ornamental, and timber tree species and belongs to genus Tetradium in family of Rutaceae. It is widely distributed in warm temperate deciduous broad-leaved forest areas in northern China, Korean Peninsula and Japan. In this study,...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788364/ https://www.ncbi.nlm.nih.gov/pubmed/35087943 http://dx.doi.org/10.1080/23802359.2021.1990151 |
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author | Yu, Mei Yu, Ke-xue Zhao, Yong-jun Tang, Jian-quan Lu, Yizeng Wang, Lei |
author_facet | Yu, Mei Yu, Ke-xue Zhao, Yong-jun Tang, Jian-quan Lu, Yizeng Wang, Lei |
author_sort | Yu, Mei |
collection | PubMed |
description | Tetradium daniellii (Benn.) T. G. Hartley is an important medicinal, ornamental, and timber tree species and belongs to genus Tetradium in family of Rutaceae. It is widely distributed in warm temperate deciduous broad-leaved forest areas in northern China, Korean Peninsula and Japan. In this study, we sequenced its sample and determined complete chloroplast genome. The CP genome of T. daniellii has a circle structure with the length 158,446 bp, includes a small single copy region (17, 972 bp), a large single copy (86, 478 bp) and two inverted repeats (26,998 bp). There were 131 genes, which included 86 protein-coding genes, 8 rRNA and 37 tRNA, and overall GC content covered by 38.3%. The gene trnK-UUU, rps16, trnG-UCC, atpF, rpoC1, trnL-UAA, trnV-UAC, petB, petD, rpl16, rpl2, ndhB, trnI-GAU, trnA-UGC and ndhA contained an intron; gene clpP, ycf3 contained 2 introns. The phylogenetic result showed that T. daniellii had the closest relationship with Tetradium ruticarpum (NC_052830). |
format | Online Article Text |
id | pubmed-8788364 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-87883642022-01-26 The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley Yu, Mei Yu, Ke-xue Zhao, Yong-jun Tang, Jian-quan Lu, Yizeng Wang, Lei Mitochondrial DNA B Resour Mitogenome Announcement Tetradium daniellii (Benn.) T. G. Hartley is an important medicinal, ornamental, and timber tree species and belongs to genus Tetradium in family of Rutaceae. It is widely distributed in warm temperate deciduous broad-leaved forest areas in northern China, Korean Peninsula and Japan. In this study, we sequenced its sample and determined complete chloroplast genome. The CP genome of T. daniellii has a circle structure with the length 158,446 bp, includes a small single copy region (17, 972 bp), a large single copy (86, 478 bp) and two inverted repeats (26,998 bp). There were 131 genes, which included 86 protein-coding genes, 8 rRNA and 37 tRNA, and overall GC content covered by 38.3%. The gene trnK-UUU, rps16, trnG-UCC, atpF, rpoC1, trnL-UAA, trnV-UAC, petB, petD, rpl16, rpl2, ndhB, trnI-GAU, trnA-UGC and ndhA contained an intron; gene clpP, ycf3 contained 2 introns. The phylogenetic result showed that T. daniellii had the closest relationship with Tetradium ruticarpum (NC_052830). Taylor & Francis 2022-01-24 /pmc/articles/PMC8788364/ /pubmed/35087943 http://dx.doi.org/10.1080/23802359.2021.1990151 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yu, Mei Yu, Ke-xue Zhao, Yong-jun Tang, Jian-quan Lu, Yizeng Wang, Lei The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley |
title | The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley |
title_full | The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley |
title_fullStr | The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley |
title_full_unstemmed | The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley |
title_short | The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley |
title_sort | first complete chloroplast genome of tetradium daniellii (benn.) t. g. hartley |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788364/ https://www.ncbi.nlm.nih.gov/pubmed/35087943 http://dx.doi.org/10.1080/23802359.2021.1990151 |
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