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The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley

Tetradium daniellii (Benn.) T. G. Hartley is an important medicinal, ornamental, and timber tree species and belongs to genus Tetradium in family of Rutaceae. It is widely distributed in warm temperate deciduous broad-leaved forest areas in northern China, Korean Peninsula and Japan. In this study,...

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Autores principales: Yu, Mei, Yu, Ke-xue, Zhao, Yong-jun, Tang, Jian-quan, Lu, Yizeng, Wang, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788364/
https://www.ncbi.nlm.nih.gov/pubmed/35087943
http://dx.doi.org/10.1080/23802359.2021.1990151
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author Yu, Mei
Yu, Ke-xue
Zhao, Yong-jun
Tang, Jian-quan
Lu, Yizeng
Wang, Lei
author_facet Yu, Mei
Yu, Ke-xue
Zhao, Yong-jun
Tang, Jian-quan
Lu, Yizeng
Wang, Lei
author_sort Yu, Mei
collection PubMed
description Tetradium daniellii (Benn.) T. G. Hartley is an important medicinal, ornamental, and timber tree species and belongs to genus Tetradium in family of Rutaceae. It is widely distributed in warm temperate deciduous broad-leaved forest areas in northern China, Korean Peninsula and Japan. In this study, we sequenced its sample and determined complete chloroplast genome. The CP genome of T. daniellii has a circle structure with the length 158,446 bp, includes a small single copy region (17, 972 bp), a large single copy (86, 478 bp) and two inverted repeats (26,998 bp). There were 131 genes, which included 86 protein-coding genes, 8 rRNA and 37 tRNA, and overall GC content covered by 38.3%. The gene trnK-UUU, rps16, trnG-UCC, atpF, rpoC1, trnL-UAA, trnV-UAC, petB, petD, rpl16, rpl2, ndhB, trnI-GAU, trnA-UGC and ndhA contained an intron; gene clpP, ycf3 contained 2 introns. The phylogenetic result showed that T. daniellii had the closest relationship with Tetradium ruticarpum (NC_052830).
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spelling pubmed-87883642022-01-26 The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley Yu, Mei Yu, Ke-xue Zhao, Yong-jun Tang, Jian-quan Lu, Yizeng Wang, Lei Mitochondrial DNA B Resour Mitogenome Announcement Tetradium daniellii (Benn.) T. G. Hartley is an important medicinal, ornamental, and timber tree species and belongs to genus Tetradium in family of Rutaceae. It is widely distributed in warm temperate deciduous broad-leaved forest areas in northern China, Korean Peninsula and Japan. In this study, we sequenced its sample and determined complete chloroplast genome. The CP genome of T. daniellii has a circle structure with the length 158,446 bp, includes a small single copy region (17, 972 bp), a large single copy (86, 478 bp) and two inverted repeats (26,998 bp). There were 131 genes, which included 86 protein-coding genes, 8 rRNA and 37 tRNA, and overall GC content covered by 38.3%. The gene trnK-UUU, rps16, trnG-UCC, atpF, rpoC1, trnL-UAA, trnV-UAC, petB, petD, rpl16, rpl2, ndhB, trnI-GAU, trnA-UGC and ndhA contained an intron; gene clpP, ycf3 contained 2 introns. The phylogenetic result showed that T. daniellii had the closest relationship with Tetradium ruticarpum (NC_052830). Taylor & Francis 2022-01-24 /pmc/articles/PMC8788364/ /pubmed/35087943 http://dx.doi.org/10.1080/23802359.2021.1990151 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yu, Mei
Yu, Ke-xue
Zhao, Yong-jun
Tang, Jian-quan
Lu, Yizeng
Wang, Lei
The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley
title The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley
title_full The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley
title_fullStr The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley
title_full_unstemmed The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley
title_short The first complete chloroplast genome of Tetradium daniellii (Benn.) T. G. Hartley
title_sort first complete chloroplast genome of tetradium daniellii (benn.) t. g. hartley
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788364/
https://www.ncbi.nlm.nih.gov/pubmed/35087943
http://dx.doi.org/10.1080/23802359.2021.1990151
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