Complete chloroplast genome of Geum aleppicum (Rosaceae)

Geum aleppicum is an important landscaping plant with high medicinal value. In this study, the complete chloroplast genome of G. aleppicum was assembled and analyzed. The assembled genome is 156,036 bp in length, which contains a large single-copy (LSC) region of 85,358 bp, a small single-copy (SSC)...

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Detalles Bibliográficos
Autores principales: Zhang, Peipei, Wang, Long, Lu, Xu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788369/
https://www.ncbi.nlm.nih.gov/pubmed/35087938
http://dx.doi.org/10.1080/23802359.2021.2024461
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author Zhang, Peipei
Wang, Long
Lu, Xu
author_facet Zhang, Peipei
Wang, Long
Lu, Xu
author_sort Zhang, Peipei
collection PubMed
description Geum aleppicum is an important landscaping plant with high medicinal value. In this study, the complete chloroplast genome of G. aleppicum was assembled and analyzed. The assembled genome is 156,036 bp in length, which contains a large single-copy (LSC) region of 85,358 bp, a small single-copy (SSC) region of 18,410 bp, and two inverted repeat regions (IRa and IRb) of 26,134 bp. A total of 137 genes were predicted, including 89 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The phylogenetic analysis indicated that G. aleppicum had the closest relationship with G. japonicum var. chinense, and all the species of Geum grouped together with highly bootstrap support.
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spelling pubmed-87883692022-01-26 Complete chloroplast genome of Geum aleppicum (Rosaceae) Zhang, Peipei Wang, Long Lu, Xu Mitochondrial DNA B Resour Mitogenome Announcement Geum aleppicum is an important landscaping plant with high medicinal value. In this study, the complete chloroplast genome of G. aleppicum was assembled and analyzed. The assembled genome is 156,036 bp in length, which contains a large single-copy (LSC) region of 85,358 bp, a small single-copy (SSC) region of 18,410 bp, and two inverted repeat regions (IRa and IRb) of 26,134 bp. A total of 137 genes were predicted, including 89 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The phylogenetic analysis indicated that G. aleppicum had the closest relationship with G. japonicum var. chinense, and all the species of Geum grouped together with highly bootstrap support. Taylor & Francis 2022-01-24 /pmc/articles/PMC8788369/ /pubmed/35087938 http://dx.doi.org/10.1080/23802359.2021.2024461 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Peipei
Wang, Long
Lu, Xu
Complete chloroplast genome of Geum aleppicum (Rosaceae)
title Complete chloroplast genome of Geum aleppicum (Rosaceae)
title_full Complete chloroplast genome of Geum aleppicum (Rosaceae)
title_fullStr Complete chloroplast genome of Geum aleppicum (Rosaceae)
title_full_unstemmed Complete chloroplast genome of Geum aleppicum (Rosaceae)
title_short Complete chloroplast genome of Geum aleppicum (Rosaceae)
title_sort complete chloroplast genome of geum aleppicum (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788369/
https://www.ncbi.nlm.nih.gov/pubmed/35087938
http://dx.doi.org/10.1080/23802359.2021.2024461
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