The complete chloroplast genome of Rhus punjabensis var. sinica

Rhus punjabensis var. sinica belongs to the family Anacardiaceae in the order Sapindales. In this study, we first reported the complete chloroplast genome sequence of R. punjabensis var. sinica. The cp genome was sequenced on Illumina Hiseq 2000 platform. The sequence was found to be 159,617 bp in l...

Descripción completa

Detalles Bibliográficos
Autores principales: Pan, Yunjia, Feng, Jinglu, Lin, Yulin, Yao, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788377/
https://www.ncbi.nlm.nih.gov/pubmed/35087942
http://dx.doi.org/10.1080/23802359.2021.1925983
_version_ 1784639550441652224
author Pan, Yunjia
Feng, Jinglu
Lin, Yulin
Yao, Hui
author_facet Pan, Yunjia
Feng, Jinglu
Lin, Yulin
Yao, Hui
author_sort Pan, Yunjia
collection PubMed
description Rhus punjabensis var. sinica belongs to the family Anacardiaceae in the order Sapindales. In this study, we first reported the complete chloroplast genome sequence of R. punjabensis var. sinica. The cp genome was sequenced on Illumina Hiseq 2000 platform. The sequence was found to be 159,617 bp in length with 37.9% GC contents, including a large single-copy region of 87,694 bp, a small single-copy region of 18,971 bp, and a pair of inverted repeats of 26,476 bp. The chloroplast genome of R. punjabensis var. sinica contains 133 genes, including 86 protein-coding genes, 8 rRNA genes, and 2 pseudogenes identified by CPGAVAS2 and BLAST search, and 37 tRNA genes annotated by tRNAscan-SE. Maximum-likelihood (ML) phylogenetic analysis showed that R. punjabensis var. sinica was sister to Rhus potaninii.
format Online
Article
Text
id pubmed-8788377
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-87883772022-01-26 The complete chloroplast genome of Rhus punjabensis var. sinica Pan, Yunjia Feng, Jinglu Lin, Yulin Yao, Hui Mitochondrial DNA B Resour Mitogenome Announcement Rhus punjabensis var. sinica belongs to the family Anacardiaceae in the order Sapindales. In this study, we first reported the complete chloroplast genome sequence of R. punjabensis var. sinica. The cp genome was sequenced on Illumina Hiseq 2000 platform. The sequence was found to be 159,617 bp in length with 37.9% GC contents, including a large single-copy region of 87,694 bp, a small single-copy region of 18,971 bp, and a pair of inverted repeats of 26,476 bp. The chloroplast genome of R. punjabensis var. sinica contains 133 genes, including 86 protein-coding genes, 8 rRNA genes, and 2 pseudogenes identified by CPGAVAS2 and BLAST search, and 37 tRNA genes annotated by tRNAscan-SE. Maximum-likelihood (ML) phylogenetic analysis showed that R. punjabensis var. sinica was sister to Rhus potaninii. Taylor & Francis 2022-01-24 /pmc/articles/PMC8788377/ /pubmed/35087942 http://dx.doi.org/10.1080/23802359.2021.1925983 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Pan, Yunjia
Feng, Jinglu
Lin, Yulin
Yao, Hui
The complete chloroplast genome of Rhus punjabensis var. sinica
title The complete chloroplast genome of Rhus punjabensis var. sinica
title_full The complete chloroplast genome of Rhus punjabensis var. sinica
title_fullStr The complete chloroplast genome of Rhus punjabensis var. sinica
title_full_unstemmed The complete chloroplast genome of Rhus punjabensis var. sinica
title_short The complete chloroplast genome of Rhus punjabensis var. sinica
title_sort complete chloroplast genome of rhus punjabensis var. sinica
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788377/
https://www.ncbi.nlm.nih.gov/pubmed/35087942
http://dx.doi.org/10.1080/23802359.2021.1925983
work_keys_str_mv AT panyunjia thecompletechloroplastgenomeofrhuspunjabensisvarsinica
AT fengjinglu thecompletechloroplastgenomeofrhuspunjabensisvarsinica
AT linyulin thecompletechloroplastgenomeofrhuspunjabensisvarsinica
AT yaohui thecompletechloroplastgenomeofrhuspunjabensisvarsinica
AT panyunjia completechloroplastgenomeofrhuspunjabensisvarsinica
AT fengjinglu completechloroplastgenomeofrhuspunjabensisvarsinica
AT linyulin completechloroplastgenomeofrhuspunjabensisvarsinica
AT yaohui completechloroplastgenomeofrhuspunjabensisvarsinica

Ejemplares similares