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Effective use of biosensors for high-throughput library screening for metabolite production

The development of fast and affordable microbial production from recombinant pathways is a challenging endeavor, with targeted improvements difficult to predict due to the complex nature of living systems. To address the limitations in biosynthetic pathways, much work has been done to generate large...

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Detalles Bibliográficos
Autores principales: Kaczmarek, Jennifer A, Prather, Kristala L J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788864/
https://www.ncbi.nlm.nih.gov/pubmed/34347108
http://dx.doi.org/10.1093/jimb/kuab049
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author Kaczmarek, Jennifer A
Prather, Kristala L J
author_facet Kaczmarek, Jennifer A
Prather, Kristala L J
author_sort Kaczmarek, Jennifer A
collection PubMed
description The development of fast and affordable microbial production from recombinant pathways is a challenging endeavor, with targeted improvements difficult to predict due to the complex nature of living systems. To address the limitations in biosynthetic pathways, much work has been done to generate large libraries of various genetic parts (promoters, RBSs, enzymes, etc.) to discover library members that bring about significantly improved levels of metabolite production. To evaluate these large libraries, high throughput approaches are necessary, such as those that rely on biosensors. There are various modes of operation to apply biosensors to library screens that are available at different scales of throughput. The effectiveness of each biosensor-based method is dependent on the pathway or strain to which it is applied, and all approaches have strengths and weaknesses to be carefully considered for any high throughput library screen. In this review, we discuss the various approaches used in biosensor screening for improved metabolite production, focusing on transcription factor-based biosensors.
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spelling pubmed-87888642022-06-08 Effective use of biosensors for high-throughput library screening for metabolite production Kaczmarek, Jennifer A Prather, Kristala L J J Ind Microbiol Biotechnol Metabolic Engineering and Synthetic Biology The development of fast and affordable microbial production from recombinant pathways is a challenging endeavor, with targeted improvements difficult to predict due to the complex nature of living systems. To address the limitations in biosynthetic pathways, much work has been done to generate large libraries of various genetic parts (promoters, RBSs, enzymes, etc.) to discover library members that bring about significantly improved levels of metabolite production. To evaluate these large libraries, high throughput approaches are necessary, such as those that rely on biosensors. There are various modes of operation to apply biosensors to library screens that are available at different scales of throughput. The effectiveness of each biosensor-based method is dependent on the pathway or strain to which it is applied, and all approaches have strengths and weaknesses to be carefully considered for any high throughput library screen. In this review, we discuss the various approaches used in biosensor screening for improved metabolite production, focusing on transcription factor-based biosensors. Oxford University Press 2021-08-04 /pmc/articles/PMC8788864/ /pubmed/34347108 http://dx.doi.org/10.1093/jimb/kuab049 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Society of Industrial Microbiology and Biotechnology. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Metabolic Engineering and Synthetic Biology
Kaczmarek, Jennifer A
Prather, Kristala L J
Effective use of biosensors for high-throughput library screening for metabolite production
title Effective use of biosensors for high-throughput library screening for metabolite production
title_full Effective use of biosensors for high-throughput library screening for metabolite production
title_fullStr Effective use of biosensors for high-throughput library screening for metabolite production
title_full_unstemmed Effective use of biosensors for high-throughput library screening for metabolite production
title_short Effective use of biosensors for high-throughput library screening for metabolite production
title_sort effective use of biosensors for high-throughput library screening for metabolite production
topic Metabolic Engineering and Synthetic Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8788864/
https://www.ncbi.nlm.nih.gov/pubmed/34347108
http://dx.doi.org/10.1093/jimb/kuab049
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