Cargando…
Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer
Colon cancer (CC) is one of the most prevalent malignant tumours of the alimentary canal. It is unclear whether pyroptosis-related lncRNA expression is correlated with CC prognosis. We discovered 20 pyroptosis-related lncRNAs that were expressed differently in CC and normal colon tissues in our inve...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789477/ https://www.ncbi.nlm.nih.gov/pubmed/35087586 http://dx.doi.org/10.1155/2022/2035808 |
_version_ | 1784639773966598144 |
---|---|
author | Liu, Li Chen, Wenzheng Li, Yebei Fu, Pengcheng Cao, Yi Li, Zhengrong Xiong, Jianbo Jie, Zhigang |
author_facet | Liu, Li Chen, Wenzheng Li, Yebei Fu, Pengcheng Cao, Yi Li, Zhengrong Xiong, Jianbo Jie, Zhigang |
author_sort | Liu, Li |
collection | PubMed |
description | Colon cancer (CC) is one of the most prevalent malignant tumours of the alimentary canal. It is unclear whether pyroptosis-related lncRNA expression is correlated with CC prognosis. We discovered 20 pyroptosis-related lncRNAs that were expressed differently in CC and normal colon tissues in our investigation. Based on differentially expressed genes (DEGs), we grouped all CC patients into two categories (Clusters 1 and 2). Cluster 1 was shown to be connected with a higher overall survival rate, upregulated expression of immune checkpoints, higher immunoscores, higher estimated scores, and immune cell infiltration. Using data from the Cancer Genome Atlas (TCGA), to create a multigene signature, the predictive significance of each lncRNA linked with pyroptosis for survival was assessed. A 9-lncRNA signature was established using the least absolute shrinkage and selection operator (LASSO) Cox regression method, and all CC patients in the TCGA cohort were classified into low-risk or high-risk groups. The low-risk CC patients had a much greater chance of survival than those in the high-risk group. The risk score is an independent prognostic indicator for predicting survival. In addition, risk characteristics are linked to immune characteristics. In summary, pyroptosis-related lncRNAs can be used to predict CC prognosis and participate in tumour immunity. |
format | Online Article Text |
id | pubmed-8789477 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-87894772022-01-26 Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer Liu, Li Chen, Wenzheng Li, Yebei Fu, Pengcheng Cao, Yi Li, Zhengrong Xiong, Jianbo Jie, Zhigang J Oncol Research Article Colon cancer (CC) is one of the most prevalent malignant tumours of the alimentary canal. It is unclear whether pyroptosis-related lncRNA expression is correlated with CC prognosis. We discovered 20 pyroptosis-related lncRNAs that were expressed differently in CC and normal colon tissues in our investigation. Based on differentially expressed genes (DEGs), we grouped all CC patients into two categories (Clusters 1 and 2). Cluster 1 was shown to be connected with a higher overall survival rate, upregulated expression of immune checkpoints, higher immunoscores, higher estimated scores, and immune cell infiltration. Using data from the Cancer Genome Atlas (TCGA), to create a multigene signature, the predictive significance of each lncRNA linked with pyroptosis for survival was assessed. A 9-lncRNA signature was established using the least absolute shrinkage and selection operator (LASSO) Cox regression method, and all CC patients in the TCGA cohort were classified into low-risk or high-risk groups. The low-risk CC patients had a much greater chance of survival than those in the high-risk group. The risk score is an independent prognostic indicator for predicting survival. In addition, risk characteristics are linked to immune characteristics. In summary, pyroptosis-related lncRNAs can be used to predict CC prognosis and participate in tumour immunity. Hindawi 2022-01-18 /pmc/articles/PMC8789477/ /pubmed/35087586 http://dx.doi.org/10.1155/2022/2035808 Text en Copyright © 2022 Li Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Liu, Li Chen, Wenzheng Li, Yebei Fu, Pengcheng Cao, Yi Li, Zhengrong Xiong, Jianbo Jie, Zhigang Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer |
title | Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer |
title_full | Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer |
title_fullStr | Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer |
title_full_unstemmed | Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer |
title_short | Comprehensive Analysis of Pyroptosis-Related Long Noncoding RNA Immune Infiltration and Prediction of Prognosis in Patients with Colon Cancer |
title_sort | comprehensive analysis of pyroptosis-related long noncoding rna immune infiltration and prediction of prognosis in patients with colon cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789477/ https://www.ncbi.nlm.nih.gov/pubmed/35087586 http://dx.doi.org/10.1155/2022/2035808 |
work_keys_str_mv | AT liuli comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer AT chenwenzheng comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer AT liyebei comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer AT fupengcheng comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer AT caoyi comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer AT lizhengrong comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer AT xiongjianbo comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer AT jiezhigang comprehensiveanalysisofpyroptosisrelatedlongnoncodingrnaimmuneinfiltrationandpredictionofprognosisinpatientswithcoloncancer |