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Integrated deep learning framework for accelerated optical coherence tomography angiography

Label-free optical coherence tomography angiography (OCTA) has become a premium imaging tool in clinics to obtain structural and functional information of microvasculatures. One primary technical drawback for OCTA, however, is its imaging speed. The current protocols require high sampling density an...

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Autores principales: Kim, Gyuwon, Kim, Jongbeom, Choi, Woo June, Kim, Chulhong, Lee, Seungchul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789830/
https://www.ncbi.nlm.nih.gov/pubmed/35079046
http://dx.doi.org/10.1038/s41598-022-05281-0
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author Kim, Gyuwon
Kim, Jongbeom
Choi, Woo June
Kim, Chulhong
Lee, Seungchul
author_facet Kim, Gyuwon
Kim, Jongbeom
Choi, Woo June
Kim, Chulhong
Lee, Seungchul
author_sort Kim, Gyuwon
collection PubMed
description Label-free optical coherence tomography angiography (OCTA) has become a premium imaging tool in clinics to obtain structural and functional information of microvasculatures. One primary technical drawback for OCTA, however, is its imaging speed. The current protocols require high sampling density and multiple acquisitions of cross-sectional B-scans to form one image frame, resulting in low acquisition speed. Recently, deep learning (DL)-based methods have gained attention in accelerating the OCTA acquisition process. They achieve faster acquisition using two independent reconstructing approaches: high-quality angiograms from a few repeated B-scans and high-resolution angiograms from undersampled data. While these approaches have shown promising results, they provide limited solutions that only partially account for the OCTA scanning mechanism. Herein, we propose an integrated DL method to simultaneously tackle both factors and further enhance the reconstruction performance in speed and quality. We designed an end-to-end deep neural network (DNN) framework with a two-staged adversarial training scheme to reconstruct fully-sampled, high-quality (8 repeated B-scans) angiograms from their corresponding undersampled, low-quality (2 repeated B-scans) counterparts by successively enhancing the pixel resolution and the image quality. Using an in-vivo mouse brain vasculature dataset, we evaluate our proposed framework through quantitative and qualitative assessments and demonstrate that our method can achieve superior reconstruction performance compared to the conventional means. Our DL-based framework can accelerate the OCTA imaging speed from 16 to 256[Formula: see text] while preserving the image quality, thus enabling a convenient software-only solution to enhance preclinical and clinical studies.
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spelling pubmed-87898302022-01-27 Integrated deep learning framework for accelerated optical coherence tomography angiography Kim, Gyuwon Kim, Jongbeom Choi, Woo June Kim, Chulhong Lee, Seungchul Sci Rep Article Label-free optical coherence tomography angiography (OCTA) has become a premium imaging tool in clinics to obtain structural and functional information of microvasculatures. One primary technical drawback for OCTA, however, is its imaging speed. The current protocols require high sampling density and multiple acquisitions of cross-sectional B-scans to form one image frame, resulting in low acquisition speed. Recently, deep learning (DL)-based methods have gained attention in accelerating the OCTA acquisition process. They achieve faster acquisition using two independent reconstructing approaches: high-quality angiograms from a few repeated B-scans and high-resolution angiograms from undersampled data. While these approaches have shown promising results, they provide limited solutions that only partially account for the OCTA scanning mechanism. Herein, we propose an integrated DL method to simultaneously tackle both factors and further enhance the reconstruction performance in speed and quality. We designed an end-to-end deep neural network (DNN) framework with a two-staged adversarial training scheme to reconstruct fully-sampled, high-quality (8 repeated B-scans) angiograms from their corresponding undersampled, low-quality (2 repeated B-scans) counterparts by successively enhancing the pixel resolution and the image quality. Using an in-vivo mouse brain vasculature dataset, we evaluate our proposed framework through quantitative and qualitative assessments and demonstrate that our method can achieve superior reconstruction performance compared to the conventional means. Our DL-based framework can accelerate the OCTA imaging speed from 16 to 256[Formula: see text] while preserving the image quality, thus enabling a convenient software-only solution to enhance preclinical and clinical studies. Nature Publishing Group UK 2022-01-25 /pmc/articles/PMC8789830/ /pubmed/35079046 http://dx.doi.org/10.1038/s41598-022-05281-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kim, Gyuwon
Kim, Jongbeom
Choi, Woo June
Kim, Chulhong
Lee, Seungchul
Integrated deep learning framework for accelerated optical coherence tomography angiography
title Integrated deep learning framework for accelerated optical coherence tomography angiography
title_full Integrated deep learning framework for accelerated optical coherence tomography angiography
title_fullStr Integrated deep learning framework for accelerated optical coherence tomography angiography
title_full_unstemmed Integrated deep learning framework for accelerated optical coherence tomography angiography
title_short Integrated deep learning framework for accelerated optical coherence tomography angiography
title_sort integrated deep learning framework for accelerated optical coherence tomography angiography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8789830/
https://www.ncbi.nlm.nih.gov/pubmed/35079046
http://dx.doi.org/10.1038/s41598-022-05281-0
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