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A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer
Regarded as the most invasive subtype, triple-negative breast cancer (TNBC) lacks the expression of estrogen receptors (ERs), progesterone receptors (PRs), and human epidermal growth factor receptor 2 (HER2) proteins. Platelets have recently been shown to be associated with metastasis of malignant t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8790231/ https://www.ncbi.nlm.nih.gov/pubmed/35096824 http://dx.doi.org/10.3389/fcell.2021.795600 |
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author | Xie, Jindong Zou, Yutian Ye, Feng Zhao, Wanzhen Xie, Xinhua Ou, Xueqi Xie, Xiaoming Wei, Weidong |
author_facet | Xie, Jindong Zou, Yutian Ye, Feng Zhao, Wanzhen Xie, Xinhua Ou, Xueqi Xie, Xiaoming Wei, Weidong |
author_sort | Xie, Jindong |
collection | PubMed |
description | Regarded as the most invasive subtype, triple-negative breast cancer (TNBC) lacks the expression of estrogen receptors (ERs), progesterone receptors (PRs), and human epidermal growth factor receptor 2 (HER2) proteins. Platelets have recently been shown to be associated with metastasis of malignant tumors. Nevertheless, the status of platelet-related genes in TNBC and their correlation with patient prognosis remain unknown. In this study, the expression and variation levels of platelet-related genes were identified and patients with TNBC were divided into three subtypes. We collected cohorts from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases. By applying the least absolute shrinkage and selection operator (LASSO) Cox regression method, we constructed a seven-gene signature which classified the two cohorts of patients with TNBC into low- or high-risk groups. Patients in the high-risk group were more likely to have lower survival rates than those in the low-risk group. The risk score, incorporated with the clinical features, was confirmed as an independent factor for predicting the overall survival (OS) time. Functional enrichment analyses revealed the involvement of a variety of vital biological processes and classical cancer-related pathways that could be important to the ultimate prognosis of TNBC. We then built a nomogram that performed well. Moreover, we tested the model in other cohorts and obtained positive outcomes. In conclusion, platelet-related genes were closely related to TNBC, and this novel signature could serve as a tool for the assessment of clinical prognosis. |
format | Online Article Text |
id | pubmed-8790231 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87902312022-01-27 A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer Xie, Jindong Zou, Yutian Ye, Feng Zhao, Wanzhen Xie, Xinhua Ou, Xueqi Xie, Xiaoming Wei, Weidong Front Cell Dev Biol Cell and Developmental Biology Regarded as the most invasive subtype, triple-negative breast cancer (TNBC) lacks the expression of estrogen receptors (ERs), progesterone receptors (PRs), and human epidermal growth factor receptor 2 (HER2) proteins. Platelets have recently been shown to be associated with metastasis of malignant tumors. Nevertheless, the status of platelet-related genes in TNBC and their correlation with patient prognosis remain unknown. In this study, the expression and variation levels of platelet-related genes were identified and patients with TNBC were divided into three subtypes. We collected cohorts from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases. By applying the least absolute shrinkage and selection operator (LASSO) Cox regression method, we constructed a seven-gene signature which classified the two cohorts of patients with TNBC into low- or high-risk groups. Patients in the high-risk group were more likely to have lower survival rates than those in the low-risk group. The risk score, incorporated with the clinical features, was confirmed as an independent factor for predicting the overall survival (OS) time. Functional enrichment analyses revealed the involvement of a variety of vital biological processes and classical cancer-related pathways that could be important to the ultimate prognosis of TNBC. We then built a nomogram that performed well. Moreover, we tested the model in other cohorts and obtained positive outcomes. In conclusion, platelet-related genes were closely related to TNBC, and this novel signature could serve as a tool for the assessment of clinical prognosis. Frontiers Media S.A. 2022-01-12 /pmc/articles/PMC8790231/ /pubmed/35096824 http://dx.doi.org/10.3389/fcell.2021.795600 Text en Copyright © 2022 Xie, Zou, Ye, Zhao, Xie, Ou, Xie and Wei. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Xie, Jindong Zou, Yutian Ye, Feng Zhao, Wanzhen Xie, Xinhua Ou, Xueqi Xie, Xiaoming Wei, Weidong A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer |
title | A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer |
title_full | A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer |
title_fullStr | A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer |
title_full_unstemmed | A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer |
title_short | A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer |
title_sort | novel platelet-related gene signature for predicting the prognosis of triple-negative breast cancer |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8790231/ https://www.ncbi.nlm.nih.gov/pubmed/35096824 http://dx.doi.org/10.3389/fcell.2021.795600 |
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