Cargando…

A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer

Regarded as the most invasive subtype, triple-negative breast cancer (TNBC) lacks the expression of estrogen receptors (ERs), progesterone receptors (PRs), and human epidermal growth factor receptor 2 (HER2) proteins. Platelets have recently been shown to be associated with metastasis of malignant t...

Descripción completa

Detalles Bibliográficos
Autores principales: Xie, Jindong, Zou, Yutian, Ye, Feng, Zhao, Wanzhen, Xie, Xinhua, Ou, Xueqi, Xie, Xiaoming, Wei, Weidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8790231/
https://www.ncbi.nlm.nih.gov/pubmed/35096824
http://dx.doi.org/10.3389/fcell.2021.795600
_version_ 1784639951922528256
author Xie, Jindong
Zou, Yutian
Ye, Feng
Zhao, Wanzhen
Xie, Xinhua
Ou, Xueqi
Xie, Xiaoming
Wei, Weidong
author_facet Xie, Jindong
Zou, Yutian
Ye, Feng
Zhao, Wanzhen
Xie, Xinhua
Ou, Xueqi
Xie, Xiaoming
Wei, Weidong
author_sort Xie, Jindong
collection PubMed
description Regarded as the most invasive subtype, triple-negative breast cancer (TNBC) lacks the expression of estrogen receptors (ERs), progesterone receptors (PRs), and human epidermal growth factor receptor 2 (HER2) proteins. Platelets have recently been shown to be associated with metastasis of malignant tumors. Nevertheless, the status of platelet-related genes in TNBC and their correlation with patient prognosis remain unknown. In this study, the expression and variation levels of platelet-related genes were identified and patients with TNBC were divided into three subtypes. We collected cohorts from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases. By applying the least absolute shrinkage and selection operator (LASSO) Cox regression method, we constructed a seven-gene signature which classified the two cohorts of patients with TNBC into low- or high-risk groups. Patients in the high-risk group were more likely to have lower survival rates than those in the low-risk group. The risk score, incorporated with the clinical features, was confirmed as an independent factor for predicting the overall survival (OS) time. Functional enrichment analyses revealed the involvement of a variety of vital biological processes and classical cancer-related pathways that could be important to the ultimate prognosis of TNBC. We then built a nomogram that performed well. Moreover, we tested the model in other cohorts and obtained positive outcomes. In conclusion, platelet-related genes were closely related to TNBC, and this novel signature could serve as a tool for the assessment of clinical prognosis.
format Online
Article
Text
id pubmed-8790231
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-87902312022-01-27 A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer Xie, Jindong Zou, Yutian Ye, Feng Zhao, Wanzhen Xie, Xinhua Ou, Xueqi Xie, Xiaoming Wei, Weidong Front Cell Dev Biol Cell and Developmental Biology Regarded as the most invasive subtype, triple-negative breast cancer (TNBC) lacks the expression of estrogen receptors (ERs), progesterone receptors (PRs), and human epidermal growth factor receptor 2 (HER2) proteins. Platelets have recently been shown to be associated with metastasis of malignant tumors. Nevertheless, the status of platelet-related genes in TNBC and their correlation with patient prognosis remain unknown. In this study, the expression and variation levels of platelet-related genes were identified and patients with TNBC were divided into three subtypes. We collected cohorts from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases. By applying the least absolute shrinkage and selection operator (LASSO) Cox regression method, we constructed a seven-gene signature which classified the two cohorts of patients with TNBC into low- or high-risk groups. Patients in the high-risk group were more likely to have lower survival rates than those in the low-risk group. The risk score, incorporated with the clinical features, was confirmed as an independent factor for predicting the overall survival (OS) time. Functional enrichment analyses revealed the involvement of a variety of vital biological processes and classical cancer-related pathways that could be important to the ultimate prognosis of TNBC. We then built a nomogram that performed well. Moreover, we tested the model in other cohorts and obtained positive outcomes. In conclusion, platelet-related genes were closely related to TNBC, and this novel signature could serve as a tool for the assessment of clinical prognosis. Frontiers Media S.A. 2022-01-12 /pmc/articles/PMC8790231/ /pubmed/35096824 http://dx.doi.org/10.3389/fcell.2021.795600 Text en Copyright © 2022 Xie, Zou, Ye, Zhao, Xie, Ou, Xie and Wei. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Xie, Jindong
Zou, Yutian
Ye, Feng
Zhao, Wanzhen
Xie, Xinhua
Ou, Xueqi
Xie, Xiaoming
Wei, Weidong
A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer
title A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer
title_full A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer
title_fullStr A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer
title_full_unstemmed A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer
title_short A Novel Platelet-Related Gene Signature for Predicting the Prognosis of Triple-Negative Breast Cancer
title_sort novel platelet-related gene signature for predicting the prognosis of triple-negative breast cancer
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8790231/
https://www.ncbi.nlm.nih.gov/pubmed/35096824
http://dx.doi.org/10.3389/fcell.2021.795600
work_keys_str_mv AT xiejindong anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT zouyutian anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT yefeng anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT zhaowanzhen anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT xiexinhua anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT ouxueqi anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT xiexiaoming anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT weiweidong anovelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT xiejindong novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT zouyutian novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT yefeng novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT zhaowanzhen novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT xiexinhua novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT ouxueqi novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT xiexiaoming novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer
AT weiweidong novelplateletrelatedgenesignatureforpredictingtheprognosisoftriplenegativebreastcancer