ASPICov: An automated pipeline for identification of SARS-Cov2 nucleotidic variants

ASPICov was developed to provide a rapid, reliable and complete analysis of NGS SARS-Cov2 samples to the biologist. This broad application tool allows to process samples from either capture or amplicon strategy and Illumina or Ion Torrent technology. To ensure FAIR data analysis, this Nextflow pipel...

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Detalles Bibliográficos
Autores principales: Tilloy, Valentin, Cuzin, Pierre, Leroi, Laura, Guérin, Emilie, Durand, Patrick, Alain, Sophie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8791494/
https://www.ncbi.nlm.nih.gov/pubmed/35081137
http://dx.doi.org/10.1371/journal.pone.0262953
Descripción
Sumario:ASPICov was developed to provide a rapid, reliable and complete analysis of NGS SARS-Cov2 samples to the biologist. This broad application tool allows to process samples from either capture or amplicon strategy and Illumina or Ion Torrent technology. To ensure FAIR data analysis, this Nextflow pipeline follows nf-core guidelines and use Singularity containers. Pipeline is implemented and available at https://gitlab.com/vtilloy/aspicov.

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