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BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure

Analyses of brain function and anatomy using shared neuroimaging data is an important development, and have acquired the potential to be scaled up with the specification of a new Brain Imaging Data Structure (BIDS) standard. To date, a variety of software tools help researchers in converting their s...

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Detalles Bibliográficos
Autores principales: Zwiers, Marcel Peter, Moia, Stefano, Oostenveld, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8792932/
https://www.ncbi.nlm.nih.gov/pubmed/35095452
http://dx.doi.org/10.3389/fninf.2021.770608
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author Zwiers, Marcel Peter
Moia, Stefano
Oostenveld, Robert
author_facet Zwiers, Marcel Peter
Moia, Stefano
Oostenveld, Robert
author_sort Zwiers, Marcel Peter
collection PubMed
description Analyses of brain function and anatomy using shared neuroimaging data is an important development, and have acquired the potential to be scaled up with the specification of a new Brain Imaging Data Structure (BIDS) standard. To date, a variety of software tools help researchers in converting their source data to BIDS but often require programming skills or are tailored to specific institutes, data sets, or data formats. In this paper, we introduce BIDScoin, a cross-platform, flexible, and user-friendly converter that provides a graphical user interface (GUI) to help users finding their way in BIDS standard. BIDScoin does not require programming skills to be set up and used and supports plugins to extend their functionality. In this paper, we show its design and demonstrate how it can be applied to a downloadable tutorial data set. BIDScoin is distributed as free and open-source software to foster the community-driven effort to promote and facilitate the use of BIDS standard.
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spelling pubmed-87929322022-01-28 BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure Zwiers, Marcel Peter Moia, Stefano Oostenveld, Robert Front Neuroinform Neuroinformatics Analyses of brain function and anatomy using shared neuroimaging data is an important development, and have acquired the potential to be scaled up with the specification of a new Brain Imaging Data Structure (BIDS) standard. To date, a variety of software tools help researchers in converting their source data to BIDS but often require programming skills or are tailored to specific institutes, data sets, or data formats. In this paper, we introduce BIDScoin, a cross-platform, flexible, and user-friendly converter that provides a graphical user interface (GUI) to help users finding their way in BIDS standard. BIDScoin does not require programming skills to be set up and used and supports plugins to extend their functionality. In this paper, we show its design and demonstrate how it can be applied to a downloadable tutorial data set. BIDScoin is distributed as free and open-source software to foster the community-driven effort to promote and facilitate the use of BIDS standard. Frontiers Media S.A. 2022-01-13 /pmc/articles/PMC8792932/ /pubmed/35095452 http://dx.doi.org/10.3389/fninf.2021.770608 Text en Copyright © 2022 Zwiers, Moia and Oostenveld. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroinformatics
Zwiers, Marcel Peter
Moia, Stefano
Oostenveld, Robert
BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure
title BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure
title_full BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure
title_fullStr BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure
title_full_unstemmed BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure
title_short BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure
title_sort bidscoin: a user-friendly application to convert source data to brain imaging data structure
topic Neuroinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8792932/
https://www.ncbi.nlm.nih.gov/pubmed/35095452
http://dx.doi.org/10.3389/fninf.2021.770608
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